Quantum Chemistry on Graphical Processing Units. 3. Analytical Energy Gradients, Geometry Optimization, and First Principles Molecular Dynamics
Publication type: Journal Article
Publication date: 2009-08-25
scimago Q1
wos Q1
SJR: 1.482
CiteScore: 9.8
Impact factor: 5.5
ISSN: 15499618, 15499626
PubMed ID:
26631777
Physical and Theoretical Chemistry
Computer Science Applications
Abstract
We demonstrate that a video gaming machine containing two consumer graphical cards can outpace a state-of-the-art quad-core processor workstation by a factor of more than 180× in Hartree-Fock energy + gradient calculations. Such performance makes it possible to run large scale Hartree-Fock and Density Functional Theory calculations, which typically require hundreds of traditional processor cores, on a single workstation. Benchmark Born-Oppenheimer molecular dynamics simulations are performed on two molecular systems using the 3-21G basis set - a hydronium ion solvated by 30 waters (94 atoms, 405 basis functions) and an aspartic acid molecule solvated by 147 waters (457 atoms, 2014 basis functions). Our GPU implementation can perform 27 ps/day and 0.7 ps/day of ab initio molecular dynamics simulation on a single desktop computer for these systems.
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Total citations:
826
Citations from 2025:
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Ufimtsev I. S., Martinez T. J. Quantum Chemistry on Graphical Processing Units. 3. Analytical Energy Gradients, Geometry Optimization, and First Principles Molecular Dynamics // Journal of Chemical Theory and Computation. 2009. Vol. 5. No. 10. pp. 2619-2628.
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Ufimtsev I. S., Martinez T. J. Quantum Chemistry on Graphical Processing Units. 3. Analytical Energy Gradients, Geometry Optimization, and First Principles Molecular Dynamics // Journal of Chemical Theory and Computation. 2009. Vol. 5. No. 10. pp. 2619-2628.
Cite this
RIS
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TY - JOUR
DO - 10.1021/ct9003004
UR - https://doi.org/10.1021/ct9003004
TI - Quantum Chemistry on Graphical Processing Units. 3. Analytical Energy Gradients, Geometry Optimization, and First Principles Molecular Dynamics
T2 - Journal of Chemical Theory and Computation
AU - Ufimtsev, Ivan S
AU - Martinez, Todd J.
PY - 2009
DA - 2009/08/25
PB - American Chemical Society (ACS)
SP - 2619-2628
IS - 10
VL - 5
PMID - 26631777
SN - 1549-9618
SN - 1549-9626
ER -
Cite this
BibTex (up to 50 authors)
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@article{2009_Ufimtsev,
author = {Ivan S Ufimtsev and Todd J. Martinez},
title = {Quantum Chemistry on Graphical Processing Units. 3. Analytical Energy Gradients, Geometry Optimization, and First Principles Molecular Dynamics},
journal = {Journal of Chemical Theory and Computation},
year = {2009},
volume = {5},
publisher = {American Chemical Society (ACS)},
month = {aug},
url = {https://doi.org/10.1021/ct9003004},
number = {10},
pages = {2619--2628},
doi = {10.1021/ct9003004}
}
Cite this
MLA
Copy
Ufimtsev, Ivan S., and Todd J. Martinez. “Quantum Chemistry on Graphical Processing Units. 3. Analytical Energy Gradients, Geometry Optimization, and First Principles Molecular Dynamics.” Journal of Chemical Theory and Computation, vol. 5, no. 10, Aug. 2009, pp. 2619-2628. https://doi.org/10.1021/ct9003004.