Open Access

Signal Transduction and Targeted Therapy, volume 8, issue 1, publication number 115

AlphaFold2 and its applications in the fields of biology and medicine

ZHENYU YANG ¹

Xiaoxi Zeng ¹

Yi Zhao ^{1, 2}

RUNSHENG CHEN ^{1, 3, 4}

Hide authors affiliations Show authors affiliations: 4 affiliations

West China Biomedical Big Data Center, West China Hospital, Sichuan University, Chengdu, China |

Key Laboratory of Intelligent Information Processing, Advanced Computer Research Center, Institute of Computing Technology, Chinese Academy of Sciences, Beijing, China |

Key Laboratory of RNA Biology, Center for Big Data Research in Health, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China |

⁴

Pingshan translational medicine center, Shenzhen Bay Laboratory, Shenzhen, China |

Publication type: Journal Article

Publication date: 2023-03-14

Springer Nature

Journal: Signal Transduction and Targeted Therapy

Quartile SCImago

Quartile WOS

Impact factor: 39.3

ISSN: 20959907, 20593635

DOI: 10.1038/s41392-023-01381-z

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Cancer Research

Genetics

Abstract

AlphaFold2 (AF2) is an artificial intelligence (AI) system developed by DeepMind that can predict three-dimensional (3D) structures of proteins from amino acid sequences with atomic-level accuracy. Protein structure prediction is one of the most challenging problems in computational biology and chemistry, and has puzzled scientists for 50 years. The advent of AF2 presents an unprecedented progress in protein structure prediction and has attracted much attention. Subsequent release of structures of more than 200 million proteins predicted by AF2 further aroused great enthusiasm in the science community, especially in the fields of biology and medicine. AF2 is thought to have a significant impact on structural biology and research areas that need protein structure information, such as drug discovery, protein design, prediction of protein function, et al. Though the time is not long since AF2 was developed, there are already quite a few application studies of AF2 in the fields of biology and medicine, with many of them having preliminarily proved the potential of AF2. To better understand AF2 and promote its applications, we will in this article summarize the principle and system architecture of AF2 as well as the recipe of its success, and particularly focus on reviewing its applications in the fields of biology and medicine. Limitations of current AF2 prediction will also be discussed.

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Citations by journals

	1 2 3
Briefings in Bioinformatics	Briefings in Bioinformatics, 3, 2.48% Briefings in Bioinformatics 3 publications, 2.48%
International Journal of Biological Macromolecules	International Journal of Biological Macromolecules, 3, 2.48% International Journal of Biological Macromolecules 3 publications, 2.48%
Computational and Structural Biotechnology Journal	Computational and Structural Biotechnology Journal, 3, 2.48% Computational and Structural Biotechnology Journal 3 publications, 2.48%
Molecules	Molecules, 2, 1.65% Molecules 2 publications, 1.65%
ACS Omega	ACS Omega, 2, 1.65% ACS Omega 2 publications, 1.65%
Journal of Chemical Information and Modeling	Journal of Chemical Information and Modeling, 2, 1.65% Journal of Chemical Information and Modeling 2 publications, 1.65%
Molecular Diversity	Molecular Diversity, 2, 1.65% Molecular Diversity 2 publications, 1.65%
Biomolecules	Biomolecules, 2, 1.65% Biomolecules 2 publications, 1.65%
International Journal of Molecular Sciences	International Journal of Molecular Sciences, 2, 1.65% International Journal of Molecular Sciences 2 publications, 1.65%
Computers in Biology and Medicine	Computers in Biology and Medicine, 2, 1.65% Computers in Biology and Medicine 2 publications, 1.65%
Current Opinion in Structural Biology	Current Opinion in Structural Biology, 2, 1.65% Current Opinion in Structural Biology 2 publications, 1.65%
Biophysical Journal	Biophysical Journal, 2, 1.65% Biophysical Journal 2 publications, 1.65%
Protein Science	Protein Science, 2, 1.65% Protein Science 2 publications, 1.65%
Nature Communications	Nature Communications, 2, 1.65% Nature Communications 2 publications, 1.65%
Expert Opinion on Drug Discovery	Expert Opinion on Drug Discovery, 1, 0.83% Expert Opinion on Drug Discovery 1 publication, 0.83%
Acta Biomaterialia	Acta Biomaterialia, 1, 0.83% Acta Biomaterialia 1 publication, 0.83%
Journal of Translational Medicine	Journal of Translational Medicine, 1, 0.83% Journal of Translational Medicine 1 publication, 0.83%
Frontiers in Physiology	Frontiers in Physiology, 1, 0.83% Frontiers in Physiology 1 publication, 0.83%
Journal of Molecular Biology	Journal of Molecular Biology, 1, 0.83% Journal of Molecular Biology 1 publication, 0.83%
Antibiotics	Antibiotics, 1, 0.83% Antibiotics 1 publication, 0.83%
Biophysical Reviews	Biophysical Reviews, 1, 0.83% Biophysical Reviews 1 publication, 0.83%
Molecular Physics	Molecular Physics, 1, 0.83% Molecular Physics 1 publication, 0.83%
Frontiers in Lab on a Chip Technologies	Frontiers in Lab on a Chip Technologies, 1, 0.83% Frontiers in Lab on a Chip Technologies 1 publication, 0.83%
Molecular Aspects of Medicine	Molecular Aspects of Medicine, 1, 0.83% Molecular Aspects of Medicine 1 publication, 0.83%
Pharmacology and Therapeutics	Pharmacology and Therapeutics, 1, 0.83% Pharmacology and Therapeutics 1 publication, 0.83%
Journal of Physical Chemistry B	Journal of Physical Chemistry B, 1, 0.83% Journal of Physical Chemistry B 1 publication, 0.83%
International Immunopharmacology	International Immunopharmacology, 1, 0.83% International Immunopharmacology 1 publication, 0.83%
Frontiers in Endocrinology	Frontiers in Endocrinology, 1, 0.83% Frontiers in Endocrinology 1 publication, 0.83%
Journal of Inorganic Biochemistry	Journal of Inorganic Biochemistry, 1, 0.83% Journal of Inorganic Biochemistry 1 publication, 0.83%
	1 2 3

Citations by publishers

	5 10 15 20 25 30 35 40
Elsevier	Elsevier, 37, 30.58% Elsevier 37 publications, 30.58%
Springer Nature	Springer Nature, 15, 12.4% Springer Nature 15 publications, 12.4%
Cold Spring Harbor Laboratory	Cold Spring Harbor Laboratory, 13, 10.74% Cold Spring Harbor Laboratory 13 publications, 10.74%
Multidisciplinary Digital Publishing Institute (MDPI)	Multidisciplinary Digital Publishing Institute (MDPI), 11, 9.09% Multidisciplinary Digital Publishing Institute (MDPI) 11 publications, 9.09%
Frontiers Media S.A.	Frontiers Media S.A., 9, 7.44% Frontiers Media S.A. 9 publications, 7.44%
American Chemical Society (ACS)	American Chemical Society (ACS), 8, 6.61% American Chemical Society (ACS) 8 publications, 6.61%
Wiley	Wiley, 8, 6.61% Wiley 8 publications, 6.61%
Oxford University Press	Oxford University Press, 4, 3.31% Oxford University Press 4 publications, 3.31%
Taylor & Francis	Taylor & Francis, 3, 2.48% Taylor & Francis 3 publications, 2.48%
Research Square Platform LLC	Research Square Platform LLC, 3, 2.48% Research Square Platform LLC 3 publications, 2.48%
Royal Society of Chemistry (RSC)	Royal Society of Chemistry (RSC), 1, 0.83% Royal Society of Chemistry (RSC) 1 publication, 0.83%
World Scientific	World Scientific, 1, 0.83% World Scientific 1 publication, 0.83%
IEEE	IEEE, 1, 0.83% IEEE 1 publication, 0.83%
Autonomous Non-profit Organization Editorial Board of the journal Uspekhi Khimii	Autonomous Non-profit Organization Editorial Board of the journal Uspekhi Khimii, 1, 0.83% Autonomous Non-profit Organization Editorial Board of the journal Uspekhi Khimii 1 publication, 0.83%
Biophysical Society of Japan	Biophysical Society of Japan, 1, 0.83% Biophysical Society of Japan 1 publication, 0.83%
Public Library of Science (PLoS)	Public Library of Science (PLoS), 1, 0.83% Public Library of Science (PLoS) 1 publication, 0.83%
IGI Global	IGI Global, 1, 0.83% IGI Global 1 publication, 0.83%
American Society for Microbiology	American Society for Microbiology, 1, 0.83% American Society for Microbiology 1 publication, 0.83%
American Society of Clinical Oncology (ASCO)	American Society of Clinical Oncology (ASCO), 1, 0.83% American Society of Clinical Oncology (ASCO) 1 publication, 0.83%
	5 10 15 20 25 30 35 40

We do not take into account publications without a DOI.
Statistics recalculated only for publications connected to researchers, organizations and labs registered on the platform.
Statistics recalculated weekly.

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YANG Z. et al. AlphaFold2 and its applications in the fields of biology and medicine // Signal Transduction and Targeted Therapy. 2023. Vol. 8. No. 1. 115

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YANG Z., Zeng X., Zhao Y., CHEN R. AlphaFold2 and its applications in the fields of biology and medicine // Signal Transduction and Targeted Therapy. 2023. Vol. 8. No. 1. 115

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TY - JOUR

DO - 10.1038/s41392-023-01381-z

UR - https://doi.org/10.1038/s41392-023-01381-z

TI - AlphaFold2 and its applications in the fields of biology and medicine

T2 - Signal Transduction and Targeted Therapy

AU - YANG, ZHENYU

AU - Zeng, Xiaoxi

AU - Zhao, Yi

AU - CHEN, RUNSHENG

PY - 2023

DA - 2023/03/14 00:00:00

PB - Springer Nature

IS - 1

VL - 8

SN - 2095-9907

SN - 2059-3635

ER -

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BibTex Copy

@article{2023_YANG,

author = {ZHENYU YANG and Xiaoxi Zeng and Yi Zhao and RUNSHENG CHEN},

title = {AlphaFold2 and its applications in the fields of biology and medicine},

journal = {Signal Transduction and Targeted Therapy},

year = {2023},

volume = {8},

publisher = {Springer Nature},

month = {mar},

url = {https://doi.org/10.1038/s41392-023-01381-z},

number = {1},

doi = {10.1038/s41392-023-01381-z}

}

Found error?

Publisher

Springer Nature

Journal

Signal Transduction and Targeted Therapy

Quartile SCImago

Quartile WOS

Impact factor

39.3

ISSN

20959907 (Print)
20593635 (Electronic)