volume 8 issue 17 pages 1985-1993

Benchmark database of accurate (MP2 and CCSD(T) complete basis set limit) interaction energies of small model complexes, DNA base pairs, and amino acid pairs.

Publication typeJournal Article
Publication date2006-03-07
scimago Q2
wos Q2
SJR0.698
CiteScore5.3
Impact factor2.9
ISSN14639076, 14639084
PubMed ID:  16633685
Physical and Theoretical Chemistry
General Physics and Astronomy
Abstract
MP2 and CCSD(T) complete basis set (CBS) limit interaction energies and geometries for more than 100 DNA base pairs, amino acid pairs and model complexes are for the first time presented together. Extrapolation to the CBS limit is done by using two-point extrapolation methods and different basis sets (aug-cc-pVDZ - aug-cc-pVTZ, aug-cc-pVTZ - aug-cc-pVQZ, cc-pVTZ - cc-pVQZ) are utilized. The CCSD(T) correction term, determined as a difference between CCSD(T) and MP2 interaction energies, is evaluated with smaller basis sets (6-31G** and cc-pVDZ). Two sets of complex geometries were used, optimized or experimental ones. The JSCH-2005 benchmark set, which is now available to the chemical community, can be used for testing lower-level computational methods. For the first screening the smaller training set (S22) containing 22 model complexes can be recommended. In this case larger basis sets were used for extrapolation to the CBS limit and also CCSD(T) and counterpoise-corrected MP2 optimized geometries were sometimes adopted.
Found 
Found 

Top-30

Journals

50
100
150
200
250
300
Journal of Chemical Physics
267 publications, 15.71%
Journal of Chemical Theory and Computation
264 publications, 15.53%
Physical Chemistry Chemical Physics
152 publications, 8.94%
Journal of Physical Chemistry A
124 publications, 7.29%
Journal of Computational Chemistry
66 publications, 3.88%
Journal of Physical Chemistry B
46 publications, 2.71%
Journal of Physical Chemistry Letters
35 publications, 2.06%
Physical Review B
34 publications, 2%
Chemical Physics Letters
34 publications, 2%
International Journal of Quantum Chemistry
29 publications, 1.71%
Molecular Physics
27 publications, 1.59%
ChemPhysChem
24 publications, 1.41%
Theoretical Chemistry Accounts
22 publications, 1.29%
Wiley Interdisciplinary Reviews: Computational Molecular Science
22 publications, 1.29%
Journal of Molecular Modeling
20 publications, 1.18%
Computational and Theoretical Chemistry
20 publications, 1.18%
Journal of the American Chemical Society
18 publications, 1.06%
Journal of Physical Chemistry C
18 publications, 1.06%
Journal of Chemical Information and Modeling
14 publications, 0.82%
Chemical Reviews
13 publications, 0.76%
Physical Review Letters
10 publications, 0.59%
Structural Chemistry
10 publications, 0.59%
Journal of Physics Condensed Matter
8 publications, 0.47%
Accounts of Chemical Research
8 publications, 0.47%
Crystal Growth and Design
8 publications, 0.47%
Chemical Science
8 publications, 0.47%
Challenges and Advances in Computational Chemistry and Physics
8 publications, 0.47%
Molecules
7 publications, 0.41%
Chemistry - A European Journal
7 publications, 0.41%
50
100
150
200
250
300

Publishers

100
200
300
400
500
600
American Chemical Society (ACS)
575 publications, 33.82%
AIP Publishing
272 publications, 16%
Royal Society of Chemistry (RSC)
196 publications, 11.53%
Wiley
191 publications, 11.24%
Elsevier
136 publications, 8%
Springer Nature
105 publications, 6.18%
American Physical Society (APS)
52 publications, 3.06%
Taylor & Francis
37 publications, 2.18%
IOP Publishing
23 publications, 1.35%
MDPI
19 publications, 1.12%
Oxford University Press
6 publications, 0.35%
World Scientific
6 publications, 0.35%
Canadian Science Publishing
5 publications, 0.29%
Pleiades Publishing
5 publications, 0.29%
Walter de Gruyter
5 publications, 0.29%
Proceedings of the National Academy of Sciences (PNAS)
5 publications, 0.29%
PeerJ
4 publications, 0.24%
Public Library of Science (PLoS)
4 publications, 0.24%
International Union of Crystallography (IUCr)
3 publications, 0.18%
The Royal Society
3 publications, 0.18%
Institute of Organic Chemistry & Biochemistry
3 publications, 0.18%
Annual Reviews
3 publications, 0.18%
Beilstein-Institut
2 publications, 0.12%
CSIRO Publishing
2 publications, 0.12%
Institute of Electrical and Electronics Engineers (IEEE)
2 publications, 0.12%
EDP Sciences
1 publication, 0.06%
IWA Publishing
1 publication, 0.06%
Society for Industrial and Applied Mathematics (SIAM)
1 publication, 0.06%
Physical Society of Japan
1 publication, 0.06%
100
200
300
400
500
600
  • We do not take into account publications without a DOI.
  • Statistics recalculated weekly.

Are you a researcher?

Create a profile to get free access to personal recommendations for colleagues and new articles.
Metrics
1.7k
Share
Cite this
GOST |
Cite this
GOST Copy
Jurečka P. et al. Benchmark database of accurate (MP2 and CCSD(T) complete basis set limit) interaction energies of small model complexes, DNA base pairs, and amino acid pairs. // Physical Chemistry Chemical Physics. 2006. Vol. 8. No. 17. pp. 1985-1993.
GOST all authors (up to 50) Copy
Jurečka P., Šponer J., Cerny J., Niemeyer C. M. Benchmark database of accurate (MP2 and CCSD(T) complete basis set limit) interaction energies of small model complexes, DNA base pairs, and amino acid pairs. // Physical Chemistry Chemical Physics. 2006. Vol. 8. No. 17. pp. 1985-1993.
RIS |
Cite this
RIS Copy
TY - JOUR
DO - 10.1039/B600027D
UR - https://doi.org/10.1039/B600027D
TI - Benchmark database of accurate (MP2 and CCSD(T) complete basis set limit) interaction energies of small model complexes, DNA base pairs, and amino acid pairs.
T2 - Physical Chemistry Chemical Physics
AU - Jurečka, Petr
AU - Šponer, Jiří
AU - Cerny, Jiri
AU - Niemeyer, C. M.
PY - 2006
DA - 2006/03/07
PB - Royal Society of Chemistry (RSC)
SP - 1985-1993
IS - 17
VL - 8
PMID - 16633685
SN - 1463-9076
SN - 1463-9084
ER -
BibTex |
Cite this
BibTex (up to 50 authors) Copy
@article{2006_Jurečka,
author = {Petr Jurečka and Jiří Šponer and Jiri Cerny and C. M. Niemeyer},
title = {Benchmark database of accurate (MP2 and CCSD(T) complete basis set limit) interaction energies of small model complexes, DNA base pairs, and amino acid pairs.},
journal = {Physical Chemistry Chemical Physics},
year = {2006},
volume = {8},
publisher = {Royal Society of Chemistry (RSC)},
month = {mar},
url = {https://doi.org/10.1039/B600027D},
number = {17},
pages = {1985--1993},
doi = {10.1039/B600027D}
}
MLA
Cite this
MLA Copy
Jurečka, Petr, et al. “Benchmark database of accurate (MP2 and CCSD(T) complete basis set limit) interaction energies of small model complexes, DNA base pairs, and amino acid pairs..” Physical Chemistry Chemical Physics, vol. 8, no. 17, Mar. 2006, pp. 1985-1993. https://doi.org/10.1039/B600027D.