Open Access
ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins
Publication type: Journal Article
Publication date: 2007-05-08
scimago Q1
wos Q1
SJR: 7.776
CiteScore: 31.7
Impact factor: 13.1
ISSN: 03051048, 13624962
PubMed ID:
17517781
Genetics
Abstract
A major problem in structural biology is the recognition of errors in experimental and theoretical models of protein structures. The ProSA program (Protein Structure Analysis) is an established tool which has a large user base and is frequently employed in the refinement and validation of experimental protein structures and in structure prediction and modeling. The analysis of protein structures is generally a difficult and cumbersome exercise. The new service presented here is a straightforward and easy to use extension of the classic ProSA program which exploits the advantages of interactive web-based applications for the display of scores and energy plots that highlight potential problems spotted in protein structures. In particular, the quality scores of a protein are displayed in the context of all known protein structures and problematic parts of a structure are shown and highlighted in a 3D molecule viewer. The service specifically addresses the needs encountered in the validation of protein structures obtained from X-ray analysis, NMR spectroscopy and theoretical calculations. ProSA-web is accessible at https://prosa.services.came.sbg.ac.at.
Found
Nothing found, try to update filter.
Top-30
Journals
|
50
100
150
200
250
300
350
400
|
|
|
Journal of Biomolecular Structure and Dynamics
377 publications, 8.03%
|
|
|
Scientific Reports
161 publications, 3.43%
|
|
|
PLoS ONE
160 publications, 3.41%
|
|
|
International Journal of Biological Macromolecules
108 publications, 2.3%
|
|
|
International Journal of Molecular Sciences
84 publications, 1.79%
|
|
|
Journal of Molecular Graphics and Modelling
79 publications, 1.68%
|
|
|
Journal of Molecular Modeling
57 publications, 1.21%
|
|
|
Molecules
52 publications, 1.11%
|
|
|
International Journal of Peptide Research and Therapeutics
51 publications, 1.09%
|
|
|
Computers in Biology and Medicine
49 publications, 1.04%
|
|
|
Frontiers in Immunology
48 publications, 1.02%
|
|
|
Infection, Genetics and Evolution
45 publications, 0.96%
|
|
|
Microbial Pathogenesis
42 publications, 0.89%
|
|
|
Computational Biology and Chemistry
41 publications, 0.87%
|
|
|
Frontiers in Microbiology
37 publications, 0.79%
|
|
|
ACS Omega
36 publications, 0.77%
|
|
|
Proteins: Structure, Function and Genetics
32 publications, 0.68%
|
|
|
Journal of Cellular Biochemistry
32 publications, 0.68%
|
|
|
Vaccines
30 publications, 0.64%
|
|
|
Journal of Genetic Engineering and Biotechnology
30 publications, 0.64%
|
|
|
3 Biotech
29 publications, 0.62%
|
|
|
Gene
29 publications, 0.62%
|
|
|
Journal of Chemical Information and Modeling
29 publications, 0.62%
|
|
|
Molecular Biotechnology
28 publications, 0.6%
|
|
|
Heliyon
28 publications, 0.6%
|
|
|
Informatics in Medicine Unlocked
28 publications, 0.6%
|
|
|
Applied Biochemistry and Biotechnology
27 publications, 0.58%
|
|
|
Molecular Diversity
27 publications, 0.58%
|
|
|
Journal of Biological Chemistry
26 publications, 0.55%
|
|
|
50
100
150
200
250
300
350
400
|
Publishers
|
200
400
600
800
1000
1200
1400
|
|
|
Elsevier
1211 publications, 25.79%
|
|
|
Springer Nature
1034 publications, 22.02%
|
|
|
Taylor & Francis
466 publications, 9.93%
|
|
|
MDPI
349 publications, 7.43%
|
|
|
Wiley
307 publications, 6.54%
|
|
|
Frontiers Media S.A.
200 publications, 4.26%
|
|
|
Public Library of Science (PLoS)
184 publications, 3.92%
|
|
|
American Chemical Society (ACS)
144 publications, 3.07%
|
|
|
Cold Spring Harbor Laboratory
139 publications, 2.96%
|
|
|
Oxford University Press
67 publications, 1.43%
|
|
|
Royal Society of Chemistry (RSC)
52 publications, 1.11%
|
|
|
Hindawi Limited
49 publications, 1.04%
|
|
|
Bentham Science Publishers Ltd.
46 publications, 0.98%
|
|
|
American Society for Microbiology
28 publications, 0.6%
|
|
|
SAGE
26 publications, 0.55%
|
|
|
American Society for Biochemistry and Molecular Biology
26 publications, 0.55%
|
|
|
PeerJ
15 publications, 0.32%
|
|
|
Proceedings of the National Academy of Sciences (PNAS)
14 publications, 0.3%
|
|
|
F1000 Research
13 publications, 0.28%
|
|
|
Mary Ann Liebert
13 publications, 0.28%
|
|
|
Institute of Electrical and Electronics Engineers (IEEE)
13 publications, 0.28%
|
|
|
World Scientific
9 publications, 0.19%
|
|
|
King Saud University
9 publications, 0.19%
|
|
|
Korea Genome Organization
9 publications, 0.19%
|
|
|
Brieflands
9 publications, 0.19%
|
|
|
Pleiades Publishing
8 publications, 0.17%
|
|
|
IGI Global
7 publications, 0.15%
|
|
|
Ovid Technologies (Wolters Kluwer Health)
7 publications, 0.15%
|
|
|
Research Square Platform LLC
7 publications, 0.15%
|
|
|
200
400
600
800
1000
1200
1400
|
- We do not take into account publications without a DOI.
- Statistics recalculated weekly.
Are you a researcher?
Create a profile to get free access to personal recommendations for colleagues and new articles.
Metrics
4.7k
Total citations:
4705
Citations from 2024:
971
(20%)
Cite this
GOST |
RIS |
BibTex |
MLA
Cite this
GOST
Copy
Wiederstein M., Sippl M. J. ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins // Nucleic Acids Research. 2007. Vol. 35. No. Web Server. p. W407-W410.
GOST all authors (up to 50)
Copy
Wiederstein M., Sippl M. J. ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins // Nucleic Acids Research. 2007. Vol. 35. No. Web Server. p. W407-W410.
Cite this
RIS
Copy
TY - JOUR
DO - 10.1093/nar/gkm290
UR - https://doi.org/10.1093/nar/gkm290
TI - ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins
T2 - Nucleic Acids Research
AU - Wiederstein, M.
AU - Sippl, M. J.
PY - 2007
DA - 2007/05/08
PB - Oxford University Press
SP - W407-W410
IS - Web Server
VL - 35
PMID - 17517781
SN - 0305-1048
SN - 1362-4962
ER -
Cite this
BibTex (up to 50 authors)
Copy
@article{2007_Wiederstein,
author = {M. Wiederstein and M. J. Sippl},
title = {ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins},
journal = {Nucleic Acids Research},
year = {2007},
volume = {35},
publisher = {Oxford University Press},
month = {may},
url = {https://doi.org/10.1093/nar/gkm290},
number = {Web Server},
pages = {W407--W410},
doi = {10.1093/nar/gkm290}
}
Cite this
MLA
Copy
Wiederstein, M., and M. J. Sippl. “ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins.” Nucleic Acids Research, vol. 35, no. Web Server, May. 2007, pp. W407-W410. https://doi.org/10.1093/nar/gkm290.