volume 45 issue 3 pages 575-580

EDMA: a computer program for topological analysis of discrete electron densities

Publication typeJournal Article
Publication date2012-05-16
scimago Q1
wos Q1
SJR1.183
CiteScore8.5
Impact factor2.8
ISSN00218898, 16005767
General Biochemistry, Genetics and Molecular Biology
Abstract

EDMAis a computer program for topological analysis of discrete electron densities according to Bader's theory of atoms in molecules. It locates critical points of the electron density and calculates their principal curvatures. Furthermore, it partitions the electron density into atomic basins and integrates the volume and charge of these atomic basins.EDMAcan also assign the type of the chemical element to atomic basins based on their integrated charges. The latter feature can be used for interpretation ofab initioelectron densities obtained in the process of structure solution. A particular feature ofEDMAis that it can handle superspace electron densities of aperiodic crystals in arbitrary dimensions.EDMAfirst generates real-space sections at a selected set of phases of the modulation wave, and subsequently analyzes each section as an ordinary three-dimensional electron density. Applications ofEDMAto model electron densities have shown that the relative accuracy of the positions of the critical points, the electron densities at the critical points and the Laplacian is of the order of 10−4or better.

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Palatinus L., Prathapa S. J., VAN SMAALEN S. EDMA: a computer program for topological analysis of discrete electron densities // Journal of Applied Crystallography. 2012. Vol. 45. No. 3. pp. 575-580.
GOST all authors (up to 50) Copy
Palatinus L., Prathapa S. J., VAN SMAALEN S. EDMA: a computer program for topological analysis of discrete electron densities // Journal of Applied Crystallography. 2012. Vol. 45. No. 3. pp. 575-580.
RIS |
Cite this
RIS Copy
TY - JOUR
DO - 10.1107/S0021889812016068
UR - https://doi.org/10.1107/S0021889812016068
TI - EDMA: a computer program for topological analysis of discrete electron densities
T2 - Journal of Applied Crystallography
AU - Palatinus, Lukáš
AU - Prathapa, Siriyara Jagannatha
AU - VAN SMAALEN, SANDER
PY - 2012
DA - 2012/05/16
PB - International Union of Crystallography (IUCr)
SP - 575-580
IS - 3
VL - 45
SN - 0021-8898
SN - 1600-5767
ER -
BibTex |
Cite this
BibTex (up to 50 authors) Copy
@article{2012_Palatinus,
author = {Lukáš Palatinus and Siriyara Jagannatha Prathapa and SANDER VAN SMAALEN},
title = {EDMA: a computer program for topological analysis of discrete electron densities},
journal = {Journal of Applied Crystallography},
year = {2012},
volume = {45},
publisher = {International Union of Crystallography (IUCr)},
month = {may},
url = {https://doi.org/10.1107/S0021889812016068},
number = {3},
pages = {575--580},
doi = {10.1107/S0021889812016068}
}
MLA
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MLA Copy
Palatinus, Lukáš, et al. “EDMA: a computer program for topological analysis of discrete electron densities.” Journal of Applied Crystallography, vol. 45, no. 3, May. 2012, pp. 575-580. https://doi.org/10.1107/S0021889812016068.