,
volume 61
,
issue 3
,
pages 314-320
The invariom model and its application: refinement ofD,L -serine at different temperatures and resolution
Birger Dittrich
1
,
C. B. Hübschle
1
,
Marc Messerschmidt
1
,
R. Kalinowski
1
,
D. Girnt
1
,
P Lüger
1
,
P. Luger
1
1
Institut für Chemie/Kristallographie der Freien Universität Berlin, Berlin, D-14195 Germany
|
Publication type: Journal Article
Publication date: 2005-04-21
SJR: —
CiteScore: —
Impact factor: —
ISSN: 01087673, 16005724
PubMed ID:
15846034
Structural Biology
Abstract
Three X-ray data sets of the same D,L-serine crystal were measured at temperatures of 298, 100 and 20 K. These data were then evaluated using invarioms and the Hansen & Coppens aspherical-atom model. Multipole populations for invarioms, which are pseudoatoms that remain approximately invariant in an intermolecular transfer, were theoretically predicted using different density functional theorem (DFT) basis sets. The invariom parameters were kept fixed and positional and thermal parameters were refined to compare the fitting against the multi-temperature data at different resolutions. The deconvolution of thermal motion and electron density with respect to data resolution was studied by application of the Hirshfeld test. Above a resolution of sin theta/lambda approximately 0.55 A-1, or d approximately 0.9 A, this test was fulfilled. When the Hirshfeld test is fulfilled, a successful modeling of the aspherical electron density with invarioms is achieved, which was proven by Fourier methods. Molecular geometry improves, especially for H atoms, when using the invariom method compared to the independent-atom model, as a comparison with neutron data shows. Based on this example, the general applicability of the invariom concept to organic molecules is proven and the aspherical density modeling of a larger biomacromolecule is within reach.
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Dittrich B. et al. The invariom model and its application: refinement ofD,L-serine at different temperatures and resolution // Acta Crystallographica Section A Foundations of Crystallography. 2005. Vol. 61. No. 3. pp. 314-320.
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Dittrich B., Hübschle C. B., Messerschmidt M., Kalinowski R., Girnt D., Lüger P., Luger P. The invariom model and its application: refinement ofD,L-serine at different temperatures and resolution // Acta Crystallographica Section A Foundations of Crystallography. 2005. Vol. 61. No. 3. pp. 314-320.
Cite this
RIS
Copy
TY - JOUR
DO - 10.1107/S0108767305005039
UR - https://doi.org/10.1107/S0108767305005039
TI - The invariom model and its application: refinement ofD,L-serine at different temperatures and resolution
T2 - Acta Crystallographica Section A Foundations of Crystallography
AU - Dittrich, Birger
AU - Hübschle, C. B.
AU - Messerschmidt, Marc
AU - Kalinowski, R.
AU - Girnt, D.
AU - Lüger, P
AU - Luger, P.
PY - 2005
DA - 2005/04/21
PB - International Union of Crystallography (IUCr)
SP - 314-320
IS - 3
VL - 61
PMID - 15846034
SN - 0108-7673
SN - 1600-5724
ER -
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@article{2005_Dittrich,
author = {Birger Dittrich and C. B. Hübschle and Marc Messerschmidt and R. Kalinowski and D. Girnt and P Lüger and P. Luger},
title = {The invariom model and its application: refinement ofD,L-serine at different temperatures and resolution},
journal = {Acta Crystallographica Section A Foundations of Crystallography},
year = {2005},
volume = {61},
publisher = {International Union of Crystallography (IUCr)},
month = {apr},
url = {https://doi.org/10.1107/S0108767305005039},
number = {3},
pages = {314--320},
doi = {10.1107/S0108767305005039}
}
Cite this
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Dittrich, Birger, et al. “The invariom model and its application: refinement ofD,L-serine at different temperatures and resolution.” Acta Crystallographica Section A Foundations of Crystallography, vol. 61, no. 3, Apr. 2005, pp. 314-320. https://doi.org/10.1107/S0108767305005039.