volume 68 issue 3 pages 215-226

Constrained evolutionary algorithm for structure prediction of molecular crystals: methodology and applications

Publication typeJournal Article
Publication date2012-05-17
SJR
CiteScore
Impact factor
ISSN01087681, 16005740
General Biochemistry, Genetics and Molecular Biology
General Medicine
Abstract

Evolutionary crystal structure prediction proved to be a powerful approach for studying a wide range of materials. Here we present a specifically designed algorithm for the prediction of the structure of complex crystals consisting of well defined molecular units. The main feature of this new approach is that each unit is treated as a whole body, which drastically reduces the search space and improves the efficiency, but necessitates the introduction of new variation operators described here. To increase the diversity of the population of structures, the initial population and part (∼ 20%) of the new generations are produced using space-group symmetry combined with random cell parameters, and random positions and orientations of molecular units. We illustrate the efficiency and reliability of this approach by a number of tests (ice, ammonia, carbon dioxide, methane, benzene, glycine and butane-1,4-diammonium dibromide). This approach easily predicts the crystal structure of methane A containing 21 methane molecules (105 atoms) per unit cell. We demonstrate that this new approach also has a high potential for the study of complex inorganic crystals as shown on examples of a complex hydrogen storage material Mg(BH4)2 and elemental boron.

Found 
Found 

Top-30

Journals

1
2
3
4
5
6
7
8
Scientific Reports
8 publications, 4.85%
Crystal Growth and Design
8 publications, 4.85%
Journal of Chemical Physics
8 publications, 4.85%
Journal of Chemical Theory and Computation
7 publications, 4.24%
Physical Review B
6 publications, 3.64%
Physical Chemistry Chemical Physics
6 publications, 3.64%
Journal of Physical Chemistry C
5 publications, 3.03%
Chemistry of Materials
5 publications, 3.03%
Angewandte Chemie - International Edition
5 publications, 3.03%
Angewandte Chemie
5 publications, 3.03%
CrystEngComm
5 publications, 3.03%
Chemical Science
4 publications, 2.42%
Computer Physics Communications
4 publications, 2.42%
Faraday Discussions
4 publications, 2.42%
Topics in Current Chemistry
3 publications, 1.82%
Journal of the American Chemical Society
3 publications, 1.82%
AIP Conference Proceedings
3 publications, 1.82%
Physical Review Letters
2 publications, 1.21%
Chemical Reviews
2 publications, 1.21%
Physical Review Materials
2 publications, 1.21%
Journal of Materials Research
2 publications, 1.21%
Chemical Physics
2 publications, 1.21%
Computational Materials Science
2 publications, 1.21%
Chemical Physics Letters
2 publications, 1.21%
Organic Electronics
2 publications, 1.21%
ACS applied materials & interfaces
2 publications, 1.21%
Chemical Communications
2 publications, 1.21%
Journal of Materials Chemistry A
2 publications, 1.21%
Dalton Transactions
2 publications, 1.21%
1
2
3
4
5
6
7
8

Publishers

5
10
15
20
25
30
35
40
American Chemical Society (ACS)
38 publications, 23.03%
Royal Society of Chemistry (RSC)
28 publications, 16.97%
Springer Nature
23 publications, 13.94%
Wiley
21 publications, 12.73%
Elsevier
18 publications, 10.91%
AIP Publishing
12 publications, 7.27%
American Physical Society (APS)
11 publications, 6.67%
Pleiades Publishing
3 publications, 1.82%
International Union of Crystallography (IUCr)
2 publications, 1.21%
MDPI
2 publications, 1.21%
IOP Publishing
2 publications, 1.21%
The Royal Society
1 publication, 0.61%
Japan Society of Applied Physics
1 publication, 0.61%
The Crystallographic Society of Japan
1 publication, 0.61%
5
10
15
20
25
30
35
40
  • We do not take into account publications without a DOI.
  • Statistics recalculated weekly.

Are you a researcher?

Create a profile to get free access to personal recommendations for colleagues and new articles.
Metrics
165
Share
Cite this
GOST |
Cite this
GOST Copy
Zhu Q. et al. Constrained evolutionary algorithm for structure prediction of molecular crystals: methodology and applications // Acta Crystallographica Section B Structural Science. 2012. Vol. 68. No. 3. pp. 215-226.
GOST all authors (up to 50) Copy
Zhu Q., Oganov A. R., Glass C. W., Stokes H. T. Constrained evolutionary algorithm for structure prediction of molecular crystals: methodology and applications // Acta Crystallographica Section B Structural Science. 2012. Vol. 68. No. 3. pp. 215-226.
RIS |
Cite this
RIS Copy
TY - JOUR
DO - 10.1107/S0108768112017466
UR - https://doi.org/10.1107/S0108768112017466
TI - Constrained evolutionary algorithm for structure prediction of molecular crystals: methodology and applications
T2 - Acta Crystallographica Section B Structural Science
AU - Zhu, Qiang
AU - Oganov, Artem R.
AU - Glass, Colin W.
AU - Stokes, Harold T.
PY - 2012
DA - 2012/05/17
PB - International Union of Crystallography (IUCr)
SP - 215-226
IS - 3
VL - 68
PMID - 22610672
SN - 0108-7681
SN - 1600-5740
ER -
BibTex |
Cite this
BibTex (up to 50 authors) Copy
@article{2012_Zhu,
author = {Qiang Zhu and Artem R. Oganov and Colin W. Glass and Harold T. Stokes},
title = {Constrained evolutionary algorithm for structure prediction of molecular crystals: methodology and applications},
journal = {Acta Crystallographica Section B Structural Science},
year = {2012},
volume = {68},
publisher = {International Union of Crystallography (IUCr)},
month = {may},
url = {https://doi.org/10.1107/S0108768112017466},
number = {3},
pages = {215--226},
doi = {10.1107/S0108768112017466}
}
MLA
Cite this
MLA Copy
Zhu, Qiang, et al. “Constrained evolutionary algorithm for structure prediction of molecular crystals: methodology and applications.” Acta Crystallographica Section B Structural Science, vol. 68, no. 3, May. 2012, pp. 215-226. https://doi.org/10.1107/S0108768112017466.
Profiles