Biomass Refined: 99% of Organic Carbon in Soils

Lai J., Kooijmans L.M., Sun W., Lombardozzi D., Campbell J.E., Gu L., Luo Y., Kuai L., Sun Y.

Terrestrial photosynthesis, or gross primary production (GPP), is the largest carbon flux in the biosphere, but its global magnitude and spatiotemporal dynamics remain uncertain1. The global annual mean GPP is historically thought to be around 120 PgC yr−1 (refs. 2–6), which is about 30–50 PgC yr−1 lower than GPP inferred from the oxygen-18 (18O) isotope7 and soil respiration8. This disparity is a source of uncertainty in predicting climate–carbon cycle feedbacks9,10. Here we infer GPP from carbonyl sulfide, an innovative tracer for CO2 diffusion from ambient air to leaf chloroplasts through stomata and mesophyll layers. We demonstrate that explicitly representing mesophyll diffusion is important for accurately quantifying the spatiotemporal dynamics of carbonyl sulfide uptake by plants. From the estimate of carbonyl sulfide uptake by plants, we infer a global contemporary GPP of 157 (±8.5) PgC yr−1, which is consistent with estimates from 18O (150–175 PgC yr−1) and soil respiration ( $${149}_{-23}^{+29}$$  PgC yr−1), but with an improved confidence level. Our global GPP is higher than satellite optical observation-driven estimates (120–140 PgC yr–1) that are used for Earth system model benchmarking. This difference predominantly occurs in the pan-tropical rainforests and is corroborated by ground measurements11, suggesting a more productive tropics than satellite-based GPP products indicated. As GPP is a primary determinant of terrestrial carbon sinks and may shape climate trajectories9,10, our findings lay a physiological foundation on which the understanding and prediction of carbon–climate feedbacks can be advanced. An analysis of the effect of mesophyll diffusion on the dynamics of the uptake of carbonyl sulfide by plants estimates global contemporary gross primary productivity to be 157 (±8.5) petagrams of carbon per year.

Torsvik T.H., Royer D.L., Marcilly C.M., Werner S.C.

Carbon-cycle modelling is essential for testing the main carbon sources and sinks as climate forcings, and we introduce and describe GEOCARB_NET, a graphical user interface for the geologic carbon and sulfur cycle model GEOCARBSULFvolc. The software system is menu-driven, user-friendly, and the user is never far removed from the basic input parameters from which atmospheric CO2 and O2 concentrations can be derived. GEOCARB_NET is supplied with several published models and the user can easily test and refine these models with different parametrizations. GEOCARB_NET also contains libraries of models and proxy data, which easily can be compared with each other. Our examples focus on how to use GEOCARB_NET in the context of Phanerozoic climate change and highlights how certain key input parameters can seriously affect reconstructed CO2 levels.

Miller H., Mulhall J., Pfau L.A., Palm R., Denkenberger D.C.

Earthworms are a resilient group of species thriving in varied habitats through feeding on decaying organic matter, and are therefore predicted to survive an abrupt sunlight reduction scenario, e.g., a nuclear winter. In this study, the feasibility and cost-effectiveness of foraging earthworms to reduce global famine in such a scenario with or without global catastrophic infrastructure loss was considered. Previously reported earthworm extraction methods (digging and sorting, vermifuge application, worm grunting, and electroshocking) were analysed, along with scalability, climate-related barriers to foraging, and pre-consumption processing requirements. Estimations of the global wild earthworm resource suggest it could provide three years of the protein needs of the current world human population, at a median cost of USD 353·kg−1 dry carbohydrate equivalent or a mean cost of USD 1200 (90% confidence interval: 32–8500)·kg−1 dry carbohydrate equivalent. At this price, foraging would cost a median of USD 185 to meet one person’s daily caloric requirement, or USD 32 if targeted to high-earthworm-biomass and low-labour-cost regions; both are more expensive than most existing resilient food solutions. While short-term targeted foraging could still be beneficial in select areas given its quick ramp-up, earthworms may bioaccumulate heavy metals, radioactive material, and other contaminants, presenting a significant health risk. Overall, earthworm foraging cannot be recommended as a scalable resilient food solution unless further research addresses uncertainties regarding cost-effectiveness and food safety.

Huang Y., Song X., Wang Y., Canadell J.G., Luo Y., Ciais P., Chen A., Hong S., Wang Y., Tao F., Li W., Xu Y., Mirzaeitalarposhti R., Elbasiouny H., Savin I., et. al.

Global estimates of the size, distribution, and vulnerability of soil inorganic carbon (SIC) remain largely unquantified. By compiling 223,593 field-based measurements and developing machine-learning models, we report that global soils store 2305 ± 636 (±1 SD) billion tonnes of carbon as SIC over the top 2-meter depth. Under future scenarios, soil acidification associated with nitrogen additions to terrestrial ecosystems will reduce global SIC (0.3 meters) up to 23 billion tonnes of carbon over the next 30 years, with India and China being the most affected. Our synthesis of present-day land-water carbon inventories and inland-water carbonate chemistry reveals that at least 1.13 ± 0.33 billion tonnes of inorganic carbon is lost to inland-waters through soils annually, resulting in large but overlooked impacts on atmospheric and hydrospheric carbon dynamics.

Heffernan L., Kothawala D.N., Tranvik L.J.

Abstract. As the permafrost region warms and permafrost soils thaw, vast stores of soil organic carbon (C) become vulnerable to enhanced microbial decomposition and lateral transport into aquatic ecosystems as dissolved organic carbon (DOC). The mobilization of permafrost soil C can drastically alter the net northern permafrost C budget. DOC entering aquatic ecosystems becomes biologically available for degradation as well as other types of aquatic processing. However, it currently remains unclear which landscape characteristics are most relevant to consider in terms of predicting DOC concentrations entering aquatic systems from permafrost regions. Here, we conducted a systematic review of 111 studies relating to, or including, concentrations of DOC in terrestrial permafrost ecosystems in the northern circumpolar region published between 2000 and 2022. We present a new permafrost DOC dataset consisting of 2845 DOC concentrations, collected from the top 3 m in permafrost soils across the northern circumpolar region. Concentrations of DOC ranged from 0.1 to 500 mg L−1 (median = 41 mg L−1) across all permafrost zones, ecoregions, soil types, and thermal horizons. Across the permafrost zones, the highest median DOC concentrations were in the sporadic permafrost zone (101 mg L−1), while lower concentrations were found in the discontinuous (60 mg L−1) and continuous (59 mg L−1) permafrost zones. However, median DOC concentrations varied in these zones across ecosystem type, with the highest median DOC concentrations in each ecosystem type of 66 and 63 mg L−1 found in coastal tundra and permafrost bog ecosystems, respectively. Coastal tundra (130 mg L−1), permafrost bogs (78 mg L−1), and permafrost wetlands (57 mg L−1) had the highest median DOC concentrations in the permafrost lens, representing a potentially long-term store of DOC. Other than in Yedoma ecosystems, DOC concentrations were found to increase following permafrost thaw and were highly constrained by total dissolved nitrogen concentrations. This systematic review highlights how DOC concentrations differ between organic- or mineral-rich deposits across the circumpolar permafrost region and identifies coastal tundra regions as areas of potentially important DOC mobilization. The quantity of permafrost-derived DOC exported laterally to aquatic ecosystems is an important step for predicting its vulnerability to decomposition.

Raza S., Irshad A., Margenot A., Zamanian K., Li N., Ullah S., Mehmood K., Ajmal Khan M., Siddique N., Zhou J., Mooney S.J., Kurganova I., Zhao X., Kuzyakov Y.

Soils are a major player in the global carbon (C) cycle and climate change by functioning as a sink or a source of atmospheric carbon dioxide (CO2). The largest terrestrial C reservoir in soils comprises two main pools: organic (SOC) and inorganic C (SIC), each having distinct fates and functions but with a large disparity in global research attention. This study quantified global soil C research trends and the proportional focus on SOC and SIC pools based on a bibliometric analysis and raise the importance of SIC pools fully underrepresented in research, applications, and modeling. Studies on soil C pools started in 1905 and has produced over 47,000 publications (>1.7 million citations). Although the global C stocks down to 2 m depth are nearly the same for SOC and SIC, the research has dominantly examined SOC (>96 % of publications and citations) with a minimal share on SIC (

Treat C.C., Virkkala A., Burke E., Bruhwiler L., Chatterjee A., Fisher J.B., Hashemi J., Parmentier F.W., Rogers B.M., Westermann S., Watts J.D., Blanc‐Betes E., Fuchs M., Kruse S., Malhotra A., et. al.

AbstractSignificant progress in permafrost carbon science made over the past decades include the identification of vast permafrost carbon stocks, the development of new pan‐Arctic permafrost maps, an increase in terrestrial measurement sites for CO2 and methane fluxes, and important factors affecting carbon cycling, including vegetation changes, periods of soil freezing and thawing, wildfire, and other disturbance events. Process‐based modeling studies now include key elements of permafrost carbon cycling and advances in statistical modeling and inverse modeling enhance understanding of permafrost region C budgets. By combining existing data syntheses and model outputs, the permafrost region is likely a wetland methane source and small terrestrial ecosystem CO2 sink with lower net CO2 uptake toward higher latitudes, excluding wildfire emissions. For 2002–2014, the strongest CO2 sink was located in western Canada (median: −52 g C m−2 y−1) and smallest sinks in Alaska, Canadian tundra, and Siberian tundra (medians: −5 to −9 g C m−2 y−1). Eurasian regions had the largest median wetland methane fluxes (16–18 g CH4 m−2 y−1). Quantifying the regional scale carbon balance remains challenging because of high spatial and temporal variability and relatively low density of observations. More accurate permafrost region carbon fluxes require: (a) the development of better maps characterizing wetlands and dynamics of vegetation and disturbances, including abrupt permafrost thaw; (b) the establishment of new year‐round CO2 and methane flux sites in underrepresented areas; and (c) improved models that better represent important permafrost carbon cycle dynamics, including non‐growing season emissions and disturbance effects.

Martin F.M., van der Heijden M.G.

SummaryMycorrhizal symbioses between plants and fungi are vital for the soil structure, nutrient cycling, plant diversity, and ecosystem sustainability. More than 250 000 plant species are associated with mycorrhizal fungi. Recent advances in genomics and related approaches have revolutionized our understanding of the biology and ecology of mycorrhizal associations. The genomes of 250+ mycorrhizal fungi have been released and hundreds of genes that play pivotal roles in regulating symbiosis development and metabolism have been characterized. rDNA metabarcoding and metatranscriptomics provide novel insights into the ecological cues driving mycorrhizal communities and functions expressed by these associations, linking genes to ecological traits such as nutrient acquisition and soil organic matter decomposition. Here, we review genomic studies that have revealed genes involved in nutrient uptake and symbiosis development, and discuss adaptations that are fundamental to the evolution of mycorrhizal lifestyles. We also evaluated the ecosystem services provided by mycorrhizal networks and discuss how mycorrhizal symbioses hold promise for sustainable agriculture and forestry by enhancing nutrient acquisition and stress tolerance. Overall, unraveling the intricate dynamics of mycorrhizal symbioses is paramount for promoting ecological sustainability and addressing current pressing environmental concerns. This review ends with major frontiers for further research.

Hu X., Chen D., Yan F., Zheng X., Fang X., Bai Y., Zhao J., Ma X., Ma C., Cai X., Deng D., Sun G., Sun F., Zhou J., Liu L.

Arbuscular mycorrhizal fungi (AMF) play an indispensable role in terrestrial ecosystem soil organic carbon (SOC) dynamics. Over the past 22 years, numerous researchers have studied the role of AMF on soil the carbon cycle, thereby producing a wealth of knowledge. However, a comprehensive summary and analysis of the basic characteristics, research outputs, and knowledge base is still lacking. To explore the authors, countries, institutions, and keywords involved in the study of AMF effects on the soil carbon cycle, publications between 2001 and 2022 were identified and extracted from the Web of Science Core Collection databases using specific keywords, and a bibliometric analysis conducted on this data using CiteSpace. The number of publications has gradually increased over time, with a notable acceleration from 2017 onward. Most of the authors did not cooperate on a regular basis, and a stable cooperative group had not yet been formed among the core authors. The Chinese Academy of Sciences produced the largest number of publications among research institutions. Specifically, China published the largest number of articles in terms of national contributions, but had less influence in collaborative networks. The most desirable research topics mainly included nitrogen and phosphorus nutrients, root colonization, diversity, organic matter and organic carbon, plant growth, and microbial community. In more recent years, research seemed to focus more on AMF-mediated carbon, nitrogen, phosphorus, nutrient exchange, alterations in microbial community structure, advancements in research techniques and methods, and in-depth studies into related mechanisms. This study serves as a valuable reference for future researchers interested in the effects of AMF on the soil carbon cycle, and provides guidelines for future innovative research.

Guo Z., Wang Y., Liu J., He L., Zhu X., Zuo Y., Wang N., Yuan F., Sun Y., Zhang L., Song Y., Song C., Xu X.

Dissolved organic carbon (DOC), the labile fraction of organic carbon, is a predominant substrate for microbes. Therefore, the turnover of DOC dominates microbial respiration in soils. We compiled a global dataset (1096 data points) of the turnover rates of DOC in 0-30 cm soil profiles and integrated the data with a machine learning algorithm to develop a global map of DOC turnover rate in global topsoil. The global DOC turnover rate in 0-30 cm soil was averaged as 0.0087 day-1, with a considerable variation among biomes. The fastest DOC turnover rate was found in tropical forests (0.0175 day-1) and the lowest in tundra (0.0036 day-1), exhibiting a declining trend from low to high latitudes. The DOC turnover rate is primarily controlled by edaphic and climate factors, as confirmed by the analyses with the structural equation model and the Mental's test. With a machine learning algorithm, we produced global maps of DOC turnover rate at a monthly scale, which were further combined with a global dataset of DOC density to produce monthly maps of carbon mineralization from DOC turnover in topsoil. The annual carbon release from DOC was estimated as 27.98 Pg C year-1 from topsoil across the globe, with the largest contribution from forest biomes, followed by pasture and grassland. Tundra released the least carbon from DOC due to its low turnover rate suppressed by low temperatures. The biome- and global-scale information of DOC turnover rate and carbon release from DOC provide a benchmark for ecosystem models to better project soil carbon dynamics and their contributions to global carbon cycling in the changing environment.

Hashimoto S., Ito A., Nishina K.

AbstractThe release of carbon dioxide from the soil to the atmosphere, known as soil respiration, is the second largest terrestrial carbon flux after photosynthesis, but the convergence of the data-driven estimates is unclear. Here we collate all historical data-driven estimates of global soil respiration to analyze convergence and uncertainty in the estimates. Despite the development of a dataset and advanced scaling techniques in the last two decades, we find that inter-model variability has increased. Reducing inter-model variability of global soil respiration is not an easy task, but when the puzzle pieces of the carbon cycle fit together perfectly, climate change prediction will be more reliable.

Friedlingstein P., O'Sullivan M., Jones M.W., Andrew R.M., Bakker D.C., Hauck J., Landschützer P., Le Quéré C., Luijkx I.T., Peters G.P., Peters W., Pongratz J., Schwingshackl C., Sitch S., Canadell J.G., et. al.

Abstract. Accurate assessment of anthropogenic carbon dioxide (CO2) emissions and their redistribution among the atmosphere, ocean, and terrestrial biosphere in a changing climate is critical to better understand the global carbon cycle, support the development of climate policies, and project future climate change. Here we describe and synthesize data sets and methodology to quantify the five major components of the global carbon budget and their uncertainties. Fossil CO2 emissions (EFOS) are based on energy statistics and cement production data, while emissions from land-use change (ELUC), mainly deforestation, are based on land-use and land-use change data and bookkeeping models. Atmospheric CO2 concentration is measured directly, and its growth rate (GATM) is computed from the annual changes in concentration. The ocean CO2 sink (SOCEAN) is estimated with global ocean biogeochemistry models and observation-based fCO2 products. The terrestrial CO2 sink (SLAND) is estimated with dynamic global vegetation models. Additional lines of evidence on land and ocean sinks are provided by atmospheric inversions, atmospheric oxygen measurements, and Earth system models. The resulting carbon budget imbalance (BIM), the difference between the estimated total emissions and the estimated changes in the atmosphere, ocean, and terrestrial biosphere, is a measure of imperfect data and incomplete understanding of the contemporary carbon cycle. All uncertainties are reported as ±1σ. For the year 2022, EFOS increased by 0.9 % relative to 2021, with fossil emissions at 9.9±0.5 Gt C yr−1 (10.2±0.5 Gt C yr−1 when the cement carbonation sink is not included), and ELUC was 1.2±0.7 Gt C yr−1, for a total anthropogenic CO2 emission (including the cement carbonation sink) of 11.1±0.8 Gt C yr−1 (40.7±3.2 Gt CO2 yr−1). Also, for 2022, GATM was 4.6±0.2 Gt C yr−1 (2.18±0.1 ppm yr−1; ppm denotes parts per million), SOCEAN was 2.8±0.4 Gt C yr−1, and SLAND was 3.8±0.8 Gt C yr−1, with a BIM of −0.1 Gt C yr−1 (i.e. total estimated sources marginally too low or sinks marginally too high). The global atmospheric CO2 concentration averaged over 2022 reached 417.1±0.1 ppm. Preliminary data for 2023 suggest an increase in EFOS relative to 2022 of +1.1 % (0.0 % to 2.1 %) globally and atmospheric CO2 concentration reaching 419.3 ppm, 51 % above the pre-industrial level (around 278 ppm in 1750). Overall, the mean of and trend in the components of the global carbon budget are consistently estimated over the period 1959–2022, with a near-zero overall budget imbalance, although discrepancies of up to around 1 Gt C yr−1 persist for the representation of annual to semi-decadal variability in CO2 fluxes. Comparison of estimates from multiple approaches and observations shows the following: (1) a persistent large uncertainty in the estimate of land-use changes emissions, (2) a low agreement between the different methods on the magnitude of the land CO2 flux in the northern extra-tropics, and (3) a discrepancy between the different methods on the strength of the ocean sink over the last decade. This living-data update documents changes in methods and data sets applied to this most recent global carbon budget as well as evolving community understanding of the global carbon cycle. The data presented in this work are available at https://doi.org/10.18160/GCP-2023 (Friedlingstein et al., 2023).

Johannessen S.C., Christian J.R.

Blue carbon will not solve climate change. The effect is too small; existing sediment carbon stock is a liability; and there is a timescale mismatch between ancient fossil fuel emissions and uptake by vegetation. Clearer communication would support informed decision-making. Blue carbon will not solve climate change. The effect is too small; existing sediment carbon stock is a liability; and there is a timescale mismatch between ancient fossil fuel emissions and uptake by vegetation. Clearer communication would support informed decision-making.

Hicks Pries C., Ryals R., Zhu B., Min K., Cooper A., Goldsmith S., Pett-Ridge J., Torn M., Asefaw Berhe A.

Over 70% of soil organic carbon (SOC) is stored at a depth greater than 20 cm belowground. A portion of this deep SOC actively cycles on annual to decadal timescales and is sensitive to global change. However, deep SOC responses to global change likely differ from surface SOC responses because biotic controls on SOC cycling become weaker as mineral controls predominate with depth. Here, we synthesize the current information on deep SOC responses to the global change drivers of warming, shifting precipitation, elevated CO2, and land use and land cover change. Most deep SOC responses can only be hypothesized because few global change studies measure deep soils, and even fewer global change experiments manipulate deep soils. We call on scientists to incorporate deep soils into their manipulations, measurements, and models so that the response of deep SOC can be accounted for in projections of nature-based climate solutions and terrestrial feedbacks to climate change. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 54 is November 2023. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.

Nissan A., Alcolombri U., Peleg N., Galili N., Jimenez-Martinez J., Molnar P., Holzner M.

AbstractCarbon efflux from soils is the largest terrestrial carbon source to the atmosphere, yet it is still one of the most uncertain fluxes in the Earth’s carbon budget. A dominant component of this flux is heterotrophic respiration, influenced by several environmental factors, most notably soil temperature and moisture. Here, we develop a mechanistic model from micro to global scale to explore how changes in soil water content and temperature affect soil heterotrophic respiration. Simulations, laboratory measurements, and field observations validate the new approach. Estimates from the model show that heterotrophic respiration has been increasing since the 1980s at a rate of about 2% per decade globally. Using future projections of surface temperature and soil moisture, the model predicts a global increase of about 40% in heterotrophic respiration by the end of the century under the worst-case emission scenario, where the Arctic region is expected to experience a more than two-fold increase, driven primarily by declining soil moisture rather than temperature increase.

Blakemore R.J.

More than a decade of research led to the conclusion in 2022 that the Soil Biome is home to ~ 2.1 × 1024 taxa and thus supports > 99.9% of global species biodiversity, mostly Bacteria or other microbes, based upon topographic field data. A subsequent 2023 report tabulated a central value of just 1.04 × 1010 taxa claiming soils had 59 ± 15%, i.e., 44–74% (or truly 10–50%?) of the global total, while incidentally confirming upper values of ~ 90% for soil Bacteria. Incompatibility of these two studies is reviewed, supporting prior biodiversity data with the vast majority of species inhabiting soils, despite excluding viruses (now with ~ 5 × 1031 virions and 1026 species most, ~ 80%, in soils). The status of Oligochaeta (earthworms) and other taxa marked “?” in the 2023 paper are clarified. Although biota totals are increased considerably, inordinate threats of topsoil erosion and poisoning yet pertain with finality of extinction. Species affected include Keystone taxa, especially earthworms and microbes, essential for a healthy Soil foundation to sustain the Tree-of-Life inhabiting the Earth.