Institute of Systematics and Evolution of Animals of the Polish Academy of Sciences

Librado P., Khan N., Fages A., Kusliy M.A., Suchan T., Tonasso-Calvière L., Schiavinato S., Alioglu D., Fromentier A., Perdereau A., Aury J., Gaunitz C., Chauvey L., Seguin-Orlando A., Der Sarkissian C., et. al.

AbstractDomestication of horses fundamentally transformed long-range mobility and warfare1. However, modern domesticated breeds do not descend from the earliest domestic horse lineage associated with archaeological evidence of bridling, milking and corralling2–4 at Botai, Central Asia around 3500 bc3. Other longstanding candidate regions for horse domestication, such as Iberia5 and Anatolia6, have also recently been challenged. Thus, the genetic, geographic and temporal origins of modern domestic horses have remained unknown. Here we pinpoint the Western Eurasian steppes, especially the lower Volga-Don region, as the homeland of modern domestic horses. Furthermore, we map the population changes accompanying domestication from 273 ancient horse genomes. This reveals that modern domestic horses ultimately replaced almost all other local populations as they expanded rapidly across Eurasia from about 2000 bc, synchronously with equestrian material culture, including Sintashta spoke-wheeled chariots. We find that equestrianism involved strong selection for critical locomotor and behavioural adaptations at the GSDMC and ZFPM1 genes. Our results reject the commonly held association7 between horseback riding and the massive expansion of Yamnaya steppe pastoralists into Europe around 3000 bc8,9 driving the spread of Indo-European languages10. This contrasts with the scenario in Asia where Indo-Iranian languages, chariots and horses spread together, following the early second millennium bc Sintashta culture11,12.

Potapov A.M., Beaulieu F., Birkhofer K., Bluhm S.L., Degtyarev M.I., Devetter M., Goncharov A.A., Gongalsky K.B., Klarner B., Korobushkin D.I., Liebke D.F., Maraun M., Mc Donnell R.J., Pollierer M.M., Schaefer I., et. al.

Soil organisms drive major ecosystem functions by mineralising carbon and releasing nutrients during decomposition processes, which supports plant growth, aboveground biodiversity and, ultimately, human nutrition. Soil ecologists often operate with functional groups to infer the effects of individual taxa on ecosystem functions and services. Simultaneous assessment of the functional roles of multiple taxa is possible using food-web reconstructions, but our knowledge of the feeding habits of many taxa is insufficient and often based on limited evidence. Over the last two decades, molecular, biochemical and isotopic tools have improved our understanding of the feeding habits of various soil organisms, yet this knowledge is still to be synthesised into a common functional framework. Here, we provide a comprehensive review of the feeding habits of consumers in soil, including protists, micro-, meso- and macrofauna (invertebrates), and soil-associated vertebrates. We have integrated existing functional group classifications with findings gained with novel methods and compiled an overarching classification across taxa focusing on key universal traits such as food resource preferences, body masses, microhabitat specialisation, protection and hunting mechanisms. Our summary highlights various strands of evidence that many functional groups commonly used in soil ecology and food-web models are feeding on multiple types of food resources. In many cases, omnivory is observed down to the species level of taxonomic resolution, challenging realism of traditional soil food-web models based on distinct resource-based energy channels. Novel methods, such as stable isotope, fatty acid and DNA gut content analyses, have revealed previously hidden facets of trophic relationships of soil consumers, such as food assimilation, multichannel feeding across trophic levels, hidden trophic niche differentiation and the importance of alternative food/prey, as well as energy transfers across ecosystem compartments. Wider adoption of such tools and the development of open interoperable platforms that assemble morphological, ecological and trophic data as traits of soil taxa will enable the refinement and expansion of the multifunctional classification of consumers in soil. The compiled multifunctional classification of soil-associated consumers will serve as a reference for ecologists working with biodiversity changes and biodiversity-ecosystem functioning relationships, making soil food-web research more accessible and reproducible.

Qiu T., Aravena M., Andrus R., Ascoli D., Bergeron Y., Berretti R., Bogdziewicz M., Boivin T., Bonal R., Caignard T., Calama R., Julio Camarero J., Clark C.J., Courbaud B., Delzon S., et. al.

Significance Physiological decline in large, old trees could involve diminished reproductive effort, but evidence is lacking. A global analysis finds that fecundity decline in large trees is pervasive, consistent with physiological decline, thus providing new evidence for tree senescence. For the 20% of species not showing fecundity declines, this lack of evidence was linked not to specific species groups, but rather to lack of large trees in the data. Large trees remain important for their structural attributes, but results highlight the critical role of intermediate trees for their contribution to reproduction.

Hacket‐Pain A., Foest J.J., Pearse I.S., LaMontagne J.M., Koenig W.D., Vacchiano G., Bogdziewicz M., Caignard T., Celebias P., Dormolen J., Fernández‐Martínez M., Moris J.V., Palaghianu C., Pesendorfer M., Satake A., et. al.

en

Skórka P., Grzywacz B., Moroń D., Lenda M.

Severe acute respiratory syndrome coronavirus 2, the virus that causes coronavirus disease 2019 (COVID-19), has expanded rapidly throughout the world. Thus, it is important to understand how global factors linked with the functioning of the Anthropocene are responsible for the COVID-19 outbreak. We tested hypotheses that the number of COVID-19 cases, number of deaths and growth rate of recorded infections: (1) are positively associated with population density as well as (2) proportion of the human population living in urban areas as a proxies of interpersonal contact rate, (3) age of the population in a given country as an indication of that population’s susceptibility to COVID-19; (4) net migration rate and (5) number of tourists as proxies of infection pressure, and negatively associated with (5) gross domestic product which is a proxy of health care quality. Data at the country level were compiled from publicly available databases and analysed with gradient boosting regression trees after controlling for confounding factors (e.g. geographic location). We found a positive association between the number of COVID-19 cases in a given country and gross domestic product, number of tourists, and geographic longitude. The number of deaths was positively associated with gross domestic product, number of tourists in a country, and geographic longitude. The effects of gross domestic product and number of tourists were non-linear, with clear thresholds above which the number of COVID-19 cases and deaths increased rapidly. The growth rate of COVID-19 cases was positively linked to the number of tourists and gross domestic product. The growth rate of COVID-19 cases was negatively associated with the mean age of the population and geographic longitude. Growth was slower in less urbanised countries. This study demonstrates that the characteristics of the human population and high mobility, but not population density, may help explain the global spread of the virus. In addition, geography, possibly via climate, may play a role in the pandemic. The unexpected positive and strong association between gross domestic product and number of cases, deaths, and growth rate suggests that COVID-19 may be a new civilisation disease affecting rich economies.

Bailey L.D., van de Pol M., Adriaensen F., Arct A., Barba E., Bellamy P.E., Bonamour S., Bouvier J., Burgess M.D., Charmantier A., Cusimano C., Doligez B., Drobniak S.M., Dubiec A., Eens M., et. al.

The phenology of many species shows strong sensitivity to climate change; however, with few large scale intra-specific studies it is unclear how such sensitivity varies over a species’ range. We document large intra-specific variation in phenological sensitivity to temperature using laying date information from 67 populations of two co-familial European songbirds, the great tit (Parus major) and blue tit (Cyanistes caeruleus), covering a large part of their breeding range. Populations inhabiting deciduous habitats showed stronger phenological sensitivity than those in evergreen and mixed habitats. However, populations with higher sensitivity tended to have experienced less rapid change in climate over the past decades, such that populations with high phenological sensitivity will not necessarily exhibit the strongest phenological advancement. Our results show that to effectively assess the impact of climate change on phenology across a species’ range it will be necessary to account for intra-specific variation in phenological sensitivity, climate change exposure, and the ecological characteristics of a population. Intra-specific variations may contribute to heterogeneous responses to climate change across a species’ range. Here, the authors investigate the phenology of two bird species across their breeding ranges, and find that their sensitivity to temperature is uncoupled from exposure to climate change.

Qiu T., Andrus R., Aravena M., Ascoli D., Bergeron Y., Berretti R., Berveiller D., Bogdziewicz M., Boivin T., Bonal R., Bragg D.C., Caignard T., Calama R., Camarero J.J., Chang-Yang C., et. al.

The relationships that control seed production in trees are fundamental to understanding the evolution of forest species and their capacity to recover from increasing losses to drought, fire, and harvest. A synthesis of fecundity data from 714 species worldwide allowed us to examine hypotheses that are central to quantifying reproduction, a foundation for assessing fitness in forest trees. Four major findings emerged. First, seed production is not constrained by a strict trade-off between seed size and numbers. Instead, seed numbers vary over ten orders of magnitude, with species that invest in large seeds producing more seeds than expected from the 1:1 trade-off. Second, gymnosperms have lower seed production than angiosperms, potentially due to their extra investments in protective woody cones. Third, nutrient-demanding species, indicated by high foliar phosphorus concentrations, have low seed production. Finally, sensitivity of individual species to soil fertility varies widely, limiting the response of community seed production to fertility gradients. In combination, these findings can inform models of forest response that need to incorporate reproductive potential. The relationships that control seed production in trees are key to understand evolutionary pressures that have shaped forests. A global synthesis of fecundity data reveals that while seed production is not constrained by a strict size-number trade-off, it is influenced by taxonomy and nutrient allocation.

Doan K., Niedziałkowska M., Stefaniak K., Sykut M., Jędrzejewska B., Ratajczak-Skrzatek U., Piotrowska N., Ridush B., Zachos F.E., Popović D., Baca M., Mackiewicz P., Kosintsev P., Makowiecki D., Charniauski M., et. al.

Abstract The present phylogeographic pattern of red deer in Eurasia is not only a result of the contraction of their distribution range into glacial refugia and postglacial expansion, but probably also an effect of replacement of some red deer s.l. mtDNA lineages by others during the last 50 000 years. To better recognize this process, we analysed 501 sequences of mtDNA cytochrome b, including 194 ancient and 75 contemporary samples newly obtained for this study. The inclusion of 161 radiocarbon-dated samples enabled us to study the phylogeny in a temporal context and conduct divergence-time estimation and molecular dating. Depending on methodology, our estimate of divergence between Cervus elaphus and Cervus canadensis varied considerably (370 000 or 1.37 million years BP, respectively). The divergence times of genetic lineages and haplogroups corresponded to large environmental changes associated with stadials and interstadials of the Late Pleistocene. Due to the climatic oscillations, the distribution of C. elaphus and C. canadensis fluctuated in north–south and east–west directions. Some haplotypes dated to pre-Last Glacial Maximum periods were not detected afterwards, representing possibly extinct populations. We indicated with a high probability the presence of red deer sensu lato in south-eastern Europe and western Asia during the Last Glacial Maximum.

Baca M., Popović D., Baca K., Lemanik A., Doan K., Horáček I., López-García J.M., Bañuls-Cardona S., Pazonyi P., Desclaux E., Crégut-Bonnoure E., Berto C., Lenardić J.M., Miękina B., Murelaga X., et. al.

The harsh climatic conditions during the Last Glacial Maximum (LGM) period have been considered the cause of local extinctions and major faunal reorganizations that took place at the end of the Pleistocene. Recent studies have shown, however, that in addition many of these ecological events were associated with abrupt climate changes during the so-called Late Glacial and the Pleistocene/Holocene transition. Here we used ancient DNA to investigate the impact of those changes on European populations of temperate vole species (Microtus arvalis). The genetic diversity of modern populations and the fossil record suggests that the species may have survived cold episodes, like LGM, not only in the traditional Mediterranean glacial refugia but also at higher latitudes in cryptic northern refugia located in Central France, the northern Alps as well as the Carpathians. However, the details of the post-glacial recoloni-zation and the impact of the Late Glacial and Early Holocene climate changes on the evolutionary history of the common vole remains unclear. To address this issue, we analysed mtDNA cytochrome b sequences from more than one hundred common vole specimens from 36 paleontological and archaeological sites scattered across Europe. Our data suggest that populations from the European mid-and high latitudes suffered a local population extinction and contraction as a result of Late Glacial and Early Holocene

Niedziałkowska M., Doan K., Górny M., Sykut M., Stefaniak K., Piotrowska N., Jędrzejewska B., Ridush B., Pawełczyk S., Mackiewicz P., Schmölcke U., Kosintsev P., Makowiecki D., Charniauski M., Krasnodębski D., et. al.

AIM: The Expansion‐Contraction model has been used to explain the responses of species to climatic changes. During periods of unfavourable climatic conditions, species retreat to refugia from where they may later expand. This paper focuses on the palaeoecology of red deer over the past 54 ka across Europe and the Urals, to reveal patterns of change in their range and explore the role of environmental conditions in determining their distribution. LOCATION: Europe and western Asia to 63°E. TAXON: Red deer (Cervus elaphus). METHODS: We collected 984 records of radiocarbon‐dated red deer subfossils from the Late Pleistocene and the Holocene, including 93 original dates. For each deer sample we compiled climatic and biome type data for the corresponding time intervals. RESULTS: During the last 54 ka changes in red deer range in Europe and the Urals were asynchronous and differed between western and eastern Europe and western Asia due to different environmental conditions in those regions. The range of suitable areas for deer during the Last Glacial Maximum (LGM) was larger than previously thought and covered vast regions not only in southern but also in western and eastern Europe. Throughout the period investigated the majority of specimens inhabited forests in the temperate climatic zone. The contribution of forests in deer localities significantly decreased during the last 4 ka, due to deforestation of Europe caused by humans. Mean January temperature was the main limiting factor for species distribution. Over 90% of the samples were found in areas where mean January temperature was above −10°C. MAIN CONCLUSIONS: Red deer response to climatic oscillations are in agreement with the Expansion‐Contraction model but in contradiction to the statement of only the southernmost LGM refugia of the species. During the last 54 ka red deer occurred mostly in forests of the temperate climatic zone.