Kumamoto University

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Kumamoto University
Short name
KU
Country, city
Japan, Kumamoto
Publications
33 079
Citations
823 458
h-index
274
Top-3 journals
Top-3 organizations
University of Tokyo
University of Tokyo (1976 publications)
Kyoto University
Kyoto University (1700 publications)
Kyushu University
Kyushu University (1689 publications)
Top-3 foreign organizations
Harvard University
Harvard University (210 publications)
National Cancer Institute
National Cancer Institute (176 publications)

Most cited in 5 years

Yang J., Antin P., Berx G., Blanpain C., Brabletz T., Bronner M., Campbell K., Cano A., Casanova J., Christofori G., Dedhar S., Derynck R., Ford H.L., Fuxe J., García de Herreros A., et. al.
2020-04-16 citations by CoLab: 1452 Abstract  
Epithelial–mesenchymal transition (EMT) encompasses dynamic changes in cellular organization from epithelial to mesenchymal phenotypes, which leads to functional changes in cell migration and invasion. EMT occurs in a diverse range of physiological and pathological conditions and is driven by a conserved set of inducing signals, transcriptional regulators and downstream effectors. With over 5,700 publications indexed by Web of Science in 2019 alone, research on EMT is expanding rapidly. This growing interest warrants the need for a consensus among researchers when referring to and undertaking research on EMT. This Consensus Statement, mediated by ‘the EMT International Association’ (TEMTIA), is the outcome of a 2-year-long discussion among EMT researchers and aims to both clarify the nomenclature and provide definitions and guidelines for EMT research in future publications. We trust that these guidelines will help to reduce misunderstanding and misinterpretation of research data generated in various experimental models and to promote cross-disciplinary collaboration to identify and address key open questions in this research field. While recognizing the importance of maintaining diversity in experimental approaches and conceptual frameworks, we emphasize that lasting contributions of EMT research to increasing our understanding of developmental processes and combatting cancer and other diseases depend on the adoption of a unified terminology to describe EMT. In this Consensus Statement, the authors (on behalf of the EMT International Association) propose guidelines to define epithelial–mesenchymal transition, its phenotypic plasticity and the associated multiple intermediate epithelial–mesenchymal cell states. Clarification of nomenclature and definitions will help reduce misinterpretation of research data generated in different experimental model systems and promote cross-disciplinary collaboration.
Meng B., Abdullahi A., Ferreira I.A., Goonawardane N., Saito A., Kimura I., Yamasoba D., Gerber P.P., Fatihi S., Rathore S., Zepeda S.K., Papa G., Kemp S.A., Ikeda T., Toyoda M., et. al.
Nature scimago Q1 wos Q1
2022-02-01 citations by CoLab: 880 Abstract  
The SARS-CoV-2 Omicron BA.1 variant emerged in 20211 and has multiple mutations in its spike protein2. Here we show that the spike protein of Omicron has a higher affinity for ACE2 compared with Delta, and a marked change in its antigenicity increases Omicron’s evasion of therapeutic monoclonal and vaccine-elicited polyclonal neutralizing antibodies after two doses. mRNA vaccination as a third vaccine dose rescues and broadens neutralization. Importantly, the antiviral drugs remdesivir and molnupiravir retain efficacy against Omicron BA.1. Replication was similar for Omicron and Delta virus isolates in human nasal epithelial cultures. However, in lung cells and gut cells, Omicron demonstrated lower replication. Omicron spike protein was less efficiently cleaved compared with Delta. The differences in replication were mapped to the entry efficiency of the virus on the basis of spike-pseudotyped virus assays. The defect in entry of Omicron pseudotyped virus to specific cell types effectively correlated with higher cellular RNA expression of TMPRSS2, and deletion of TMPRSS2 affected Delta entry to a greater extent than Omicron. Furthermore, drug inhibitors targeting specific entry pathways3 demonstrated that the Omicron spike inefficiently uses the cellular protease TMPRSS2, which promotes cell entry through plasma membrane fusion, with greater dependency on cell entry through the endocytic pathway. Consistent with suboptimal S1/S2 cleavage and inability to use TMPRSS2, syncytium formation by the Omicron spike was substantially impaired compared with the Delta spike. The less efficient spike cleavage of Omicron at S1/S2 is associated with a shift in cellular tropism away from TMPRSS2-expressing cells, with implications for altered pathogenesis. The spike protein of the Omicron variant of SARS-CoV-2 has a higher affinity for ACE2 than Delta, and a marked change in its antigenicity increases Omicron’s evasion of therapeutic and vaccine-elicited neutralizing antibodies.
Suzuki R., Yamasoba D., Kimura I., Wang L., Kishimoto M., Ito J., Morioka Y., Nao N., Nasser H., Uriu K., Kosugi Y., Tsuda M., Orba Y., Sasaki M., Shimizu R., et. al.
Nature scimago Q1 wos Q1
2022-02-01 citations by CoLab: 554 Abstract  
The emergence of the Omicron variant of SARS-CoV-2 is an urgent global health concern1. In this study, our statistical modelling suggests that Omicron has spread more rapidly than the Delta variant in several countries including South Africa. Cell culture experiments showed Omicron to be less fusogenic than Delta and than an ancestral strain of SARS-CoV-2. Although the spike (S) protein of Delta is efficiently cleaved into two subunits, which facilitates cell–cell fusion2,3, the Omicron S protein was less efficiently cleaved compared to the S proteins of Delta and ancestral SARS-CoV-2. Furthermore, in a hamster model, Omicron showed decreased lung infectivity and was less pathogenic compared to Delta and ancestral SARS-CoV-2. Our multiscale investigations reveal the virological characteristics of Omicron, including rapid growth in the human population, lower fusogenicity and attenuated pathogenicity. In vitro studies in human cell lines and in vivo studies in a hamster model show that the SARS-CoV-2 Omicron variant is less pathogenic than both the Delta variant and an ancestral strain of SARS-CoV-2.
El-Saber Batiha G., Magdy Beshbishy A., G. Wasef L., Elewa Y.H., A. Al-Sagan A., Abd El-Hack M.E., Taha A.E., M. Abd-Elhakim Y., Prasad Devkota H.
Nutrients scimago Q1 wos Q1 Open Access
2020-03-24 citations by CoLab: 487 PDF Abstract  
Medicinal plants have been used from ancient times for human healthcare as in the form of traditional medicines, spices, and other food components. Garlic (Allium sativum L.) is an aromatic herbaceous plant that is consumed worldwide as food and traditional remedy for various diseases. It has been reported to possess several biological properties including anticarcinogenic, antioxidant, antidiabetic, renoprotective, anti-atherosclerotic, antibacterial, antifungal, and antihypertensive activities in traditional medicines. A. sativum is rich in several sulfur-containing phytoconstituents such as alliin, allicin, ajoenes, vinyldithiins, and flavonoids such as quercetin. Extracts and isolated compounds of A. sativum have been evaluated for various biological activities including antibacterial, antiviral, antifungal, antiprotozoal, antioxidant, anti-inflammatory, and anticancer activities among others. This review examines the phytochemical composition, pharmacokinetics, and pharmacological activities of A. sativum extracts as well as its main active constituent, allicin.
Saito A., Irie T., Suzuki R., Maemura T., Nasser H., Uriu K., Kosugi Y., Shirakawa K., Sadamasu K., Kimura I., Ito J., Wu J., Iwatsuki-Horimoto K., Ito M., Yamayoshi S., et. al.
Nature scimago Q1 wos Q1
2021-11-25 citations by CoLab: 481 Abstract  
During the current coronavirus disease 2019 (COVID-19) pandemic, a variety of mutations have accumulated in the viral genome of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and, at the time of writing, four variants of concern are considered to be potentially hazardous to human society1. The recently emerged B.1.617.2/Delta variant of concern is closely associated with the COVID-19 surge that occurred in India in the spring of 2021 (ref. 2). However, the virological properties of B.1.617.2/Delta remain unclear. Here we show that the B.1.617.2/Delta variant is highly fusogenic and notably more pathogenic than prototypic SARS-CoV-2 in infected hamsters. The P681R mutation in the spike protein, which is highly conserved in this lineage, facilitates cleavage of the spike protein and enhances viral fusogenicity. Moreover, we demonstrate that the P681R-bearing virus exhibits higher pathogenicity compared with its parental virus. Our data suggest that the P681R mutation is a hallmark of the virological phenotype of the B.1.617.2/Delta variant and is associated with enhanced pathogenicity. The P681R mutation in the spike protein renders the Delta variant more pathogenic than prototypic SARS-CoV-2 in infected hamsters, and facilitates spike protein cleavage and enhances viral fusogenicity.
Motozono C., Toyoda M., Zahradnik J., Saito A., Nasser H., Tan T.S., Ngare I., Kimura I., Uriu K., Kosugi Y., Yue Y., Shimizu R., Ito J., Torii S., Yonekawa A., et. al.
Cell Host and Microbe scimago Q1 wos Q1
2021-07-01 citations by CoLab: 463 Abstract  
Many SARS-CoV-2 variants with naturally acquired mutations have emerged. These mutations can affect viral properties such as infectivity and immune resistance. Although the sensitivity of naturally occurring SARS-CoV-2 variants to humoral immunity has been investigated, sensitivity to human leukocyte antigen (HLA)-restricted cellular immunity remains largely unexplored. Here, we demonstrate that two recently emerging mutations in the receptor-binding domain of the SARS-CoV-2 spike protein, L452R (in B.1.427/429 and B.1.617) and Y453F (in B.1.1.298), confer escape from HLA-A24-restricted cellular immunity. These mutations reinforce affinity toward the host entry receptor ACE2. Notably, the L452R mutation increases spike stability, viral infectivity, viral fusogenicity, and thereby promotes viral replication. These data suggest that HLA-restricted cellular immunity potentially affects the evolution of viral phenotypes and that a further threat of the SARS-CoV-2 pandemic is escape from cellular immunity.
Yang H., Jia B., Zhang Z., Qu X., Li G., Lin W., Zhu D., Dai K., Zheng Y.
Nature Communications scimago Q1 wos Q1 Open Access
2020-01-21 citations by CoLab: 448 PDF Abstract  
Magnesium-based biodegradable metals (BMs) as bone implants have better mechanical properties than biodegradable polymers, yet their strength is roughly less than 350 MPa. In this work, binary Zn alloys with alloying elements Mg, Ca, Sr, Li, Mn, Fe, Cu, and Ag respectively, are screened systemically by in vitro and in vivo studies. Li exhibits the most effective strengthening role in Zn, followed by Mg. Alloying leads to accelerated degradation, but adequate mechanical integrity can be expected for Zn alloys when considering bone fracture healing. Adding elements Mg, Ca, Sr and Li into Zn can improve the cytocompatibility, osteogenesis, and osseointegration. Further optimization of the ternary Zn-Li alloy system results in Zn-0.8Li-0.4Mg alloy with the ultimate tensile strength 646.69 ± 12.79 MPa and Zn-0.8Li-0.8Mn alloy with elongation 103.27 ± 20%. In summary, biocompatible Zn-based BMs with strength close to pure Ti are promising candidates in orthopedics for load-bearing applications. Biodegradable implants are of great interest in orthopaedic applications but have been limited by low mechanical strength. Here, the authors examine systematically in detail the strengthening of biodegradable zinc by alloying with beneficial elements using mechanical, biodegradability and biocompatibility testing.
Edalati K., Bachmaier A., Beloshenko V.A., Beygelzimer Y., Blank V.D., Botta W.J., Bryła K., Čížek J., Divinski S., Enikeev N.A., Estrin Y., Faraji G., Figueiredo R.B., Fuji M., Furuta T., et. al.
Materials Research Letters scimago Q1 wos Q1 Open Access
2022-02-17 citations by CoLab: 351 PDF
Alexander S.P., Christopoulos A., Davenport A.P., Kelly E., Mathie A., Peters J.A., Veale E.L., Armstrong J.F., Faccenda E., Harding S.D., Pawson A.J., Southan C., Davies J.A., Abbracchio M.P., Alexander W., et. al.
British Journal of Pharmacology scimago Q1 wos Q1
2021-09-16 citations by CoLab: 347 Abstract  
The Concise Guide to PHARMACOLOGY 2021/22 is the fifth in this series of biennial publications. The Concise Guide provides concise overviews, mostly in tabular format, of the key properties of nearly 1900 human drug targets with an emphasis on selective pharmacology (where available), plus links to the open access knowledgebase source of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. Although the Concise Guide constitutes over 500 pages, the material presented is substantially reduced compared to information and links presented on the website. It provides a permanent, citable, point-in-time record that will survive database updates. The full contents of this section can be found at http://onlinelibrary.wiley.com/doi/bph.15538. G protein-coupled receptors are one of the six major pharmacological targets into which the Guide is divided, with the others being: ion channels, nuclear hormone receptors, catalytic receptors, enzymes and transporters. These are presented with nomenclature guidance and summary information on the best available pharmacological tools, alongside key references and suggestions for further reading. The landscape format of the Concise Guide is designed to facilitate comparison of related targets from material contemporary to mid-2021, and supersedes data presented in the 2019/20, 2017/18, 2015/16 and 2013/14 Concise Guides and previous Guides to Receptors and Channels. It is produced in close conjunction with the Nomenclature and Standards Committee of the International Union of Basic and Clinical Pharmacology (NC-IUPHAR), therefore, providing official IUPHAR classification and nomenclature for human drug targets, where appropriate.
Yamasoba D., Kimura I., Nasser H., Morioka Y., Nao N., Ito J., Uriu K., Tsuda M., Zahradnik J., Shirakawa K., Suzuki R., Kishimoto M., Kosugi Y., Kobiyama K., Hara T., et. al.
Cell scimago Q1 wos Q1
2022-06-01 citations by CoLab: 283 Abstract  
Summary Soon after the emergence and global spread of the SARS-CoV-2 Omicron lineage BA.1, another Omicron lineage, BA.2, began outcompeting BA.1. The results of statistical analysis showed that the effective reproduction number of BA.2 is 1.4-fold higher than that of BA.1. Neutralization experiments revealed that immunity induced by COVID vaccines widely administered to human populations is not effective against BA.2, similar to BA.1, and that the antigenicity of BA.2 is notably different from that of BA.1. Cell culture experiments showed that the BA.2 spike confers higher replication efficacy in human nasal epithelial cells and is more efficient in mediating syncytia formation than the BA.1 spike. Furthermore, infection experiments using hamsters indicated that the BA.2 spike-bearing virus is more pathogenic than the BA.1 spike-bearing virus. Altogether, the results of our multiscale investigations suggest that the risk of BA.2 to global health is potentially higher than that of BA.1.
Kuyama N., Izumiya Y., Takashio S., Usuku H., Tabira A., Oguni T., Yamamoto M., Hirakawa K., Ishii M., Tabata N., Hoshiyama T., Kanazawa H., Hanatani S., Kidoh M., Oda S., et. al.
Circulation Journal scimago Q1 wos Q2
2025-03-25 citations by CoLab: 0
Koyano K., Atsukawa M., Tsubota A., Kondo C., Miwa T., Namisaki T., Hiraoka A., Toyoda H., Tada T., Kobayashi Y., Kawata K., Matsuura K., Mikami S., Kawabe N., Oikawa T., et. al.
Journal of Clinical Medicine scimago Q1 wos Q1 Open Access
2025-03-10 citations by CoLab: 0 PDF Abstract  
Background/Objective: Recently, there has been an increasing need to implement the diagnosis of the presence of covert hepatic encephalopathy (CHE) in patients with cirrhosis. The aim of this study was to identify novel factors associated with CHE in clinical practice. Methods: This retrospective study enrolled a total of 402 patients with cirrhosis at 17 institutions. The Stroop test was performed to diagnose CHE at each center. Results: The patients comprised 233 males and 169 females, with a median age of 69 (IQR, 61–75) years. The median albumin and 25(OH)D3 levels were 3.9 (3.5–4.3) g/dL and 15.4 (11.0–21.0) ng/mL, respectively. This cohort included 181 patients with esophageal varices (EV). Multivariate analysis revealed that low 25(OH)D3 (p < 0.05) and EV (p < 0.05) were independent risk factors for CHE. When limited to only laboratory factors, low albumin (p < 0.01) and low 25(OH)D3 (p < 0.05) were independent factors for CHE. The optimal cut-off values of albumin and 25(OH)D3 for predicting CHE were 3.7 g/dL and 16.5 ng/mL, respectively. The prevalence of CHE was 59.2% for 25(OH)D3 < 16.5 ng/mL and EV, 53.8% for albumin < 3.7 g/dL and 25(OH)D3 < 16.5 ng/mL, and 66.7% for albumin < 3.7 g/dL, EV, and 25(OH)D3 < 16.5 ng/mL. Conclusions: Low 25(OH)D3 and albumin levels, and the EV were positively associated with CHE in patients with cirrhosis. Specifically, the prevalence of CHE increased with a decrease in 25(OH)D3 levels. Patients with such risk factors should be actively and carefully examined for the presence of CHE.
Kiyama M., Amagasaki M., Okamoto T.
Electronics (Switzerland) scimago Q2 wos Q2 Open Access
2025-03-07 citations by CoLab: 0 PDF Abstract  
With increasing incidents due to congestion at events, effective pedestrian guidance has become a critical safety concern. Recent research has explored the application of reinforcement learning to crowd simulation, where agents learn optimal actions through trial and error to maximize rewards based on environmental states. This study investigates the use of reinforcement learning and simulation techniques to mitigate pedestrian congestion through improved guidance systems. We employ the Multi-Agent Deep Deterministic Policy Gradient (MA-DDPG), a multi-agent reinforcement learning approach, and propose an enhanced method for learning the Q-function for actors within the MA-DDPG framework. Using the Mojiko Fireworks Festival dataset as a case study, we evaluated the effectiveness of our proposed method by comparing congestion levels with existing approaches. The results demonstrate that our method successfully reduces congestion, with agents exhibiting superior cooperation in managing crowd flow. This improvement in agent coordination suggests the potential for practical applications in real-world crowd management scenarios.
Harada S., Teraoka R., Kuroda N., Teramoto W.
i-Perception scimago Q2 wos Q2 Open Access
2025-03-04 citations by CoLab: 0 PDF Abstract  
It is well known that aging affects fundamental perceptual functions. Numerous studies have investigated age-related changes in visual motion perception and demonstrated that aging impairs motion processing. However, limited studies have explored age-related changes in auditory motion perception, and whether aging influences auditory motion perception based on interaural level differences remains unknown. This study examined age-related differences in the discrimination of auditory motion direction based on interaural level differences. We conducted two experiments to estimate the signal-to-noise ratio and motion coherence thresholds required to discriminate auditory motion and visual motion directions, respectively, in younger and older adults. Results showed that age significantly impairs visual motion discrimination; however, it does not impair auditory motion discrimination. These findings suggest that aging does not affect auditory motion perception based on interaural level differences, at least with the broadband noise used in this experiment.
Asigbee T.W., Nakamura-Hoshi M., Kuse N., Ishii H., Ishikawa K., Kawana-Tachikawa A., Horibe E., Nakashima M., Yamano Y., Uchimaru K., Matano T.
Microbiology spectrum scimago Q1 wos Q2 Open Access
2025-03-04 citations by CoLab: 0 PDF Abstract  
ABSTRACT Human T-cell leukemia virus type 1 (HTLV-1) induces chronic long-term latent infection that can cause fatal diseases, including adult T-cell leukemia. HTLV-1 production is poor and undetectable during the asymptomatic phase of infection. Virus-host immune interaction in latent infection has not been fully determined. In the present study, virus-specific antibody and T-cell responses in asymptomatic HTLV-1 carriers ( n = 77) were investigated. Neutralizing antibody responses were significantly higher in individuals with higher anti-Env SU (gp46) antibody levels and positively correlated with proviral loads. Overnight ex vivo culture of peripheral blood mononuclear cells resulted in detectable HTLV-1 Gag antigen (p19) expression in CD4 + T cells and interferon-γ (IFN-γ) induction in CD8 + T cells. Frequencies of these p19-expressing CD4 + T cells and non-specific IFN-γ-induced CD8 + T cells were positively correlated with proviral loads, respectively. Tax-specific CD8 + T-cell frequencies were not associated with proviral loads but inversely correlated with the ratios of p19-expressing CD4 + T-cell frequencies to proviral loads, implying the involvement of Tax-specific CD8 + T cells in the control of HTLV-1 replication. These results provide insights into the elucidation of the virus-host immune interaction in latent HTLV-1 infection. IMPORTANCE Human T-cell leukemia virus type 1 (HTLV-1) can cause fatal diseases, including adult T-cell leukemia in humans after long-term asymptomatic infection. In asymptomatic HTLV-1 carriers, substantial proviruses are detectable in lymphocytes, and the association of a higher proviral load with a higher risk of disease progression has been observed. However, viral replication is controlled and HTLV-1 production is poor in asymptomatic carriers. Virus-host immune interaction during latent infection has not been fully determined. In the present study, virus-specific antibody and T-cell responses in asymptomatic HTLV-1 carriers were investigated. Neutralizing antibody responses were positively correlated with proviral loads. Tax-specific CD8 + T-cell frequencies were not associated with proviral loads but inversely correlated with the ratios of p19-expressing CD4 + T-cell frequencies to proviral loads, supporting the notion that Tax-specific CD8 + T-cell responses play an important role in the control of HTLV-1 replication. These results provide insights into the mechanism of virus-host immune interaction in latent HTLV-1 infection.
Yamashita Y., Morimoto T., Muraoka N., Shioyama W., Chatani R., Shibata T., Nishimoto Y., Ogihara Y., Doi K., Oi M., Shiga T., Sueta D., Kim K., Tanabe Y., Koitabashi N., et. al.
Circulation scimago Q1 wos Q1
2025-03-04 citations by CoLab: 1 Abstract  
BACKGROUND: The optimal duration of anticoagulation therapy for patients with cancer and acute low-risk pulmonary embolism (PE) is clinically relevant, but evidence is lacking. Prolonged anticoagulation therapy could have a potential benefit for prevention of thrombotic events; however, it could also increase the risk of bleeding. METHODS: In a multicenter, open-label, adjudicator-blinded, randomized clinical trial at 32 institutions in Japan, we randomly assigned patients with cancer and acute low-risk PE of the simplified version of the Pulmonary Embolism Severity Index score of 1, in a 1:1 ratio, to receive either an 18-month or a 6-month rivaroxaban treatment. The primary end point was recurrent venous thromboembolism (VTE) at 18 months. The major secondary end point was major bleeding at 18 months according to the criteria of the International Society on Thrombosis and Hemostasis. The primary hypothesis was that an 18-month treatment was superior to a 6-month treatment in terms of the primary end point. RESULTS: From February 2021 to March 2023, 179 patients were randomized, and after the exclusion of one patient who withdrew consent, 178 were included in the intention-to-treat population: 89 patients in the 18-month rivaroxaban group and 89 in the 6-month rivaroxaban group. The mean age was 65.7 years; 47% of the patients were men, and 12% had symptoms of PE at baseline. The primary end point of recurrent VTE occurred in 5 of the 89 patients (5.6%) in the 18-month rivaroxaban group and in 17 of the 89 (19.1%) in the 6-month rivaroxaban group (odds ratio, 0.25 [95% CI, 0.09–0.72]; P =0.01). Among 22 recurrent VTE, 5 patients presented with a symptomatic recurrent VTE; recurrent PE occurred in 11 patients, including 2 with main and 4 with lobar PEs; and recurrent deep vein thrombosis was seen in 11 patients, including 3 with proximal deep vein thromboses. The major secondary end point of major bleeding occurred in 7 of the 89 patients (7.8%) in the 18-month rivaroxaban group and in 5 of the 89 patients (5.6%) in the 6-month rivaroxaban group (odds ratio, 1.43 [95% CI, 0.44–4.70]; P =0.55). CONCLUSIONS: In patients with cancer and acute low-risk PE of the simplified version of the Pulmonary Embolism Severity Index score of 1, the 18-month rivaroxaban treatment was superior to the 6-month rivaroxaban treatment with respect to recurrent VTE events. REGISTRATION: URL: https://www.clinicaltrials.gov ; Unique identifier: NCT04724460.
Yamamoto H., Matano T.
eLife scimago Q1 wos Q1 Open Access
2025-03-03 citations by CoLab: 0 Abstract  
HIV and simian immunodeficiency virus (SIV) infections are known for impaired neutralizing antibody (NAb) responses. While sequential virus–host B cell interaction appears to be basally required for NAb induction, driver molecular signatures predisposing to NAb induction still remain largely unknown. Here we describe SIV-specific NAb induction following a virus–host interplay decreasing aberrant viral drive of phosphoinositide 3-kinase (PI3K). Screening of seventy difficult-to-neutralize SIVmac239-infected macaques found nine NAb-inducing animals, with seven selecting for a specific CD8+ T-cell escape mutation in viral nef before NAb induction. This Nef-G63E mutation reduced excess Nef interaction-mediated drive of B-cell maturation-limiting PI3K/mammalian target of rapamycin complex 2 (mTORC2). In vivo imaging cytometry depicted preferential Nef perturbation of cognate Envelope-specific B cells, suggestive of polarized contact-dependent Nef transfer and corroborating cognate B-cell maturation post-mutant selection up to NAb induction. Results collectively exemplify a NAb induction pattern extrinsically reciprocal to human PI3K gain-of-function antibody-dysregulating disease and indicate that harnessing the PI3K/mTORC2 axis may facilitate NAb induction against difficult-to-neutralize viruses including HIV/SIV.
Yamamoto H., Matano T.
eLife scimago Q1 wos Q1 Open Access
2025-03-03 citations by CoLab: 0 Abstract  
HIV and simian immunodeficiency virus (SIV) infections are known for impaired neutralizing antibody (NAb) responses. While sequential virus–host B cell interaction appears to be basally required for NAb induction, driver molecular signatures predisposing to NAb induction still remain largely unknown. Here we describe SIV-specific NAb induction following a virus–host interplay decreasing aberrant viral drive of phosphoinositide 3-kinase (PI3K). Screening of seventy difficult-to-neutralize SIVmac239-infected macaques found nine NAb-inducing animals, with seven selecting for a specific CD8+ T-cell escape mutation in viral nef before NAb induction. This Nef-G63E mutation reduced excess Nef interaction-mediated drive of B-cell maturation-limiting PI3K/mammalian target of rapamycin complex 2 (mTORC2). In vivo imaging cytometry depicted preferential Nef perturbation of cognate Envelope-specific B cells, suggestive of polarized contact-dependent Nef transfer and corroborating cognate B-cell maturation post-mutant selection up to NAb induction. Results collectively exemplify a NAb induction pattern extrinsically reciprocal to human PI3K gain-of-function antibody-dysregulating disease and indicate that harnessing the PI3K/mTORC2 axis may facilitate NAb induction against difficult-to-neutralize viruses including HIV/SIV.
Kaneda Y., Lu Y., Sun J., Shimada K., Emori C., Noda T., Koyano T., Matsuyama M., Miyata H., Ikawa M.
2025-03-03 citations by CoLab: 0 Abstract  
Sperm morphogenesis is a tightly regulated differentiation process, disruption of which leads to sperm malfunction and male infertility. Here, we show that Tex38 knockout (KO) male mice are infertile. Tex38 KO spermatids exhibit excess retention of residual cytoplasm around the head, resulting in abnormal sperm morphology with backward head bending. TEX38 interacts and colocalizes with ZDHHC19, a testis-enriched acyltransferase catalyzing protein S-palmitoylation, at the plasma membrane of spermatids. ZDHHC19 and TEX38 are each downregulated in mouse testes lacking the other protein. TEX38 stabilizes and localizes ZDHHC19 to the plasma membrane of cultured cells and vice versa, consolidating their interdependence. Mice deficient in ZDHHC19 or harboring a C142S mutation that disables the palmitoyltransferase activity of ZDHHC19 display phenotypes resembling those of Tex38 KO mice. Strikingly, ZDHHC19 palmitoylates ARRDC5, an arrestin family protein regulating sperm differentiation. Overall, our findings indicate that TEX38 forms a stable complex with ZDHHC19 at the plasma membrane of spermatids, which governs downstream S-palmitoylation of proteins essential for morphological transformation of spermatids.
Ichinose K., Kurita Y., Higuchi R., Mizumoto I.
2025-03-01 citations by CoLab: 0
NANAO M., NOZAKI T., FUJIE Y., MUKUNOKI T.
2025-03-01 citations by CoLab: 0
Nagayama T., Anselmucci F., Lenoir N., Sibille L., Mukunoki T., Otani J., Viggiani G.
Geotechnique Letters scimago Q1 wos Q3
2025-03-01 citations by CoLab: 0 Abstract  
While many aspects of the growth mechanisms of plant roots and their ability to adapt to the surrounding environment are now clearer from a biological perspective, relatively limited research has focused on the mechanical interaction of a root and the soil in which it grows, including the root trajectory and the strain developing in the soil. The use of X-ray tomography allows for the 4D (space plus time) analysis of such an interaction. This paper investigates how plant roots grow when approaching a harder-to-penetrate soil – here, a finer and denser sand. The root trajectories in nine bilayered sand samples are imaged and characterised in terms of their tortuosity. The angle between the root axis and the gravity direction is also measured to characterise the change of trajectory of the root when approaching the stiffer sand layer. In addition, we report, for one test, the strain path experienced by the soil around the root when the latter is elongating and bending, through imaging conducted at regular intervals during the root growth.
Funama Y., Nagayama Y., Sakabe D., Ito Y., Chiba Y., Nakaura T., Oda S., Kidoh M., Hirai T.
Academic Radiology scimago Q1 wos Q1
2025-03-01 citations by CoLab: 1 Abstract  
This study evaluated the performance of super-resolution deep learning-based reconstruction (SR-DLR) and compared with it that of hybrid iterative reconstruction (HIR) and normal-resolution DLR (NR-DLR) for enhancing image quality in computed tomography (CT) images across various field of view (FOV) sizes, radiation doses, and noise reduction strengths.
Sueta D., Araki S., Usuku H., Fujisaki T., Kiyama T., Ishii M., Tabata N., Fujisue K., Kusaka H., Hanatani S., Yamamoto E., Haruguchi H., Takamori H., Tsujita K.
Journal of Cardiology scimago Q2 wos Q2
2025-03-01 citations by CoLab: 2 Abstract  
Despite strong recommendations in the latest guidelines for implementing guideline-directed medical therapy (GDMT) before discharge, there is a lack of data on the clinical characteristics and outcomes of older patients with heart failure (HF). Therefore, this study aimed to investigate the clinical characteristics and outcomes of patients with HF in a super-aging society during the GDMT era.
Miyauchi S., Morooka K., Kurazume R.
2025-03-01 citations by CoLab: 0

Since 1950

Total publications
33079
Total citations
823458
Citations per publication
24.89
Average publications per year
441.05
Average authors per publication
7.83
h-index
274
Metrics description

Top-30

Fields of science

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General Medicine, 6315, 19.09%
Biochemistry, 3067, 9.27%
Molecular Biology, 2712, 8.2%
Cell Biology, 2396, 7.24%
Condensed Matter Physics, 2104, 6.36%
Oncology, 2053, 6.21%
General Chemistry, 2020, 6.11%
Cancer Research, 1768, 5.34%
Cardiology and Cardiovascular Medicine, 1680, 5.08%
General Materials Science, 1494, 4.52%
Surgery, 1403, 4.24%
Immunology, 1351, 4.08%
Neurology (clinical), 1282, 3.88%
Mechanical Engineering, 1239, 3.75%
Mechanics of Materials, 1203, 3.64%
Organic Chemistry, 1161, 3.51%
Pharmacology, 1154, 3.49%
Radiology, Nuclear Medicine and imaging, 1135, 3.43%
Genetics, 1090, 3.3%
Materials Chemistry, 1053, 3.18%
Drug Discovery, 1029, 3.11%
Pharmaceutical Science, 958, 2.9%
Hematology, 944, 2.85%
General Physics and Astronomy, 849, 2.57%
Electronic, Optical and Magnetic Materials, 836, 2.53%
Multidisciplinary, 832, 2.52%
Biophysics, 805, 2.43%
Electrical and Electronic Engineering, 800, 2.42%
Immunology and Allergy, 751, 2.27%
Physical and Theoretical Chemistry, 719, 2.17%
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Journals

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Publishers

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With other organizations

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With foreign organizations

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With other countries

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USA, 2526, 7.64%
China, 1059, 3.2%
United Kingdom, 612, 1.85%
Australia, 489, 1.48%
Germany, 470, 1.42%
France, 452, 1.37%
Republic of Korea, 332, 1%
Canada, 318, 0.96%
India, 289, 0.87%
Singapore, 286, 0.86%
Italy, 280, 0.85%
Indonesia, 249, 0.75%
Thailand, 189, 0.57%
Egypt, 188, 0.57%
Netherlands, 176, 0.53%
Bangladesh, 163, 0.49%
Malaysia, 156, 0.47%
Sweden, 150, 0.45%
Spain, 146, 0.44%
Switzerland, 130, 0.39%
Turkey, 126, 0.38%
Russia, 104, 0.31%
Czech Republic, 100, 0.3%
Denmark, 98, 0.3%
Belgium, 96, 0.29%
Poland, 93, 0.28%
Austria, 91, 0.28%
Vietnam, 89, 0.27%
Iran, 77, 0.23%
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  • We do not take into account publications without a DOI.
  • Statistics recalculated daily.
  • Publications published earlier than 1950 are ignored in the statistics.
  • The horizontal charts show the 30 top positions.
  • Journals quartiles values are relevant at the moment.